Structure of PDB 8sgn Chain G Binding Site BS01

Receptor Information
>8sgn Chain G (length=408) Species: 10377 (Human herpesvirus 4 strain B95-8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VCQYTIQSLIHLTGEDPGFFNVEIPEFPFYPTCNVCTADVNVTINFDVGG
KKHQLDLDFGQLTPHTKAVYQPRGAFGGSENATNLFLLELLGAGELALTM
RSKKLPINVTTGEEQQVSLESVDVYFQDVFGTMWCHHAEMQNPVYLIPET
VPYIKWDNCNSTNITAVVRAQGLDVTLPLSLPTSAQDSNFSVKTEMLGNE
IDIECIMEDGEISQVLPGDNKFNITCSGYESHVPSGGILTSTSPPGTGYA
YSLRLTPRPVSRFLGNNSILYVFYSGNGGDYCIQSNIVFSDEIPASQDMP
TNTTDITYVGDNATYSVPMVTSEDANSPNVTVTAFWAWPNNTETDFKCKW
TLTSGTPSGCENISGAFASNRTFDITVSGLGTAPKTLIITRTATNATTTT
HKVIFSKA
Ligand information
Ligand IDFUC
InChIInChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3+,4+,5-,6+/m0/s1
InChIKeySHZGCJCMOBCMKK-SXUWKVJYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341C[C@@H]1O[C@@H](O)[C@@H](O)[C@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)C
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)O)O)O)O
OpenEye OEToolkits 1.5.0C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O
CACTVS 3.341C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
FormulaC6 H12 O5
Namealpha-L-fucopyranose;
alpha-L-fucose;
6-deoxy-alpha-L-galactopyranose;
L-fucose;
fucose
ChEMBLCHEMBL1232862
DrugBankDB04473
ZINCZINC000001532814
PDB chain8sgn Chain K Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8sgn Crystal structure of Epstein-Barr virus glycoprotein 350 (gp350) in complex with Cy651H02, a monoclonal antibody isolated from macaques immunized with a gp350 nanoparticle vaccine
Resolution2.2 Å
Binding residue
(original residue number in PDB)		D62 L63 D64 G80 A81 F82
Binding residue
(residue number reindexed from 1)		D56 L57 D58 G74 A75 F76
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8sgn, PDBe:8sgn, PDBj:8sgn
PDBsum8sgn
PubMed
UniProtP03200|GP350_EBVB9 Envelope glycoprotein GP350 (Gene Name=BLLF1)

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