Structure of PDB 7pmo Chain G Binding Site BS01

Receptor Information
>7pmo Chain G (length=849) Species: 411470 (Mediterraneibacter gnavus ATCC 29149) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KAPPLVNLAEEKDVKVTVGENMDLKNADLLTDGDKYYLQHDATGNKEGNN
WENYQEQGTEVTSTAEGKNGVWVQVDLGASYPLEVINLKRQVYDGQATIG
NGNPSGQGKRLKGTKISYKNTAIVIGNEEDLSDGQIVYYEGNPTLPDGVK
QPENVSKPYEEAMGGQWFYMDYANKNGLGATELGTTKEARYIRVYTENPK
GAAVKFMELGIYGYENEQDVQSQDGPRRVIDNEHPMMIATAYSNDVYEIG
QEEGPELQGSNTVDGRWNAIPDDLKENNVLLLHTNNLRQFAPDHIGQAYL
QAFHEHGLQIAYEQGAPIMLLGLTAAATPENGGTQYNITADMDYGWLDLM
YRMYPNMQGVFNTENFWAGIHPPCEGSAKMLEIADRFGGFFVWSDQDHGS
TVTNIVSNANMKKALEKHGDAFYLIYKNTSSNQPDDLKTSSFFQGSWLAG
YTGGWGMLSDTWAWDKQFSKLWQGAGSYNNWQRLCGEPEALLGMQMMSTY
LGGGVIYTFEFPEIVYGTSNTNSPANTHVLTELFRYIVNHPAPSKKEIME
ETKAVLYGNVSSDFYSGLSGKPTGFQIYETGRYGIIPVIPTWGTRAEVTK
KLIQEADKLGVTPPNVLDVKDKNLSGQAKQKYFKDLYPIEYVGNAFADKW
EGTWYLYNNKVNTNEKQHAILPLEGEEESARLKVEMEPHEFMIMNESGDG
TAMDITLNNYRVNKDEIIFDNKFGLTWTGDFSPGQTTINGKLSVYKYMDE
YNVVNAPEGKLSPEDNELRTTTFELTKLAKEPKVQVVKGQQPDTDGQPQY
TEPKVEFNEETGKAVITIQTNGWVDLSITGLEFVYDENAQKIEDEPIKS
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain7pmo Chain G Residue 906 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pmo The human gut symbiont Ruminococcus gnavus shows specificity to blood group A antigen during mucin glycan foraging: Implication for niche colonisation in the gastrointestinal tract.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		D812 N813 Q846
Binding residue
(residue number reindexed from 1)		D765 N766 Q799
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Biological Process
External links
PDB RCSB:7pmo, PDBe:7pmo, PDBj:7pmo
PDBsum7pmo
PubMed34936658
UniProtA7B6A6

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