Structure of PDB 7ce9 Chain G Binding Site BS01

Receptor Information

>7ce9 Chain G (length=573) Species: 243233 (Methylococcus capsulatus str. Bath)

NSELDRLSKDDRNWVMQTKDYSATHFSRLTEINSHNVKNLKVAWTLSTGT
LHGHEGAPLVVDGIMYIHTPFPNNVYAVDLNDTRKMLWQYKPKQNPAARA
VACCDVVNRGLAYVPAGEHGPAKIFLNQLDGHIVALNAKTGEEIWKMENS
DIAMGSTLTGAPFVVKDKVLVGSAGAELGVRGYVTAYNIKDGKQEWRAYA
TGPDEDLLLDKDFNKDNPHYGQFGLGLSTWEGDAWKIGGGTNWGWYAYDP
KLDMIYYGSGNPAPWNETMRPGDNKWTMTIWGRDADTGRAKFGYQKTPHD
EWDYAGVNYMGLSEQEVDGKLTPLLTHPDRNGLVYTLNRETGALVNAFKI
DDTVNWVKKVDLKTGLPIRDPEYSTRMDHNAKGICPSAMGYHNQGIESYD
PDKKLFFMGVNHICMDWEPFMLPYRAGQFFVGATLNMYPGPKGMLGQVKA
MNAVTGKMEWEVPEKFAVWGGTLATAGDLVFYGTLDGFIKARDTRTGELK
WQFQLPSGVIGHPITYQHNGKQYIAIYSGVGGWPGVGLVFDLKDPTAGLG
AVGAFRELAHYTQMGGSVFVFSL

Ligand information

• Ligand ID: CA
• InChI: InChI=1S/Ca/q+2
• InChIKey: BHPQYMZQTOCNFJ-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: [Ca++]
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Ca+2]
• Formula: Ca
• Name: CALCIUM ION
• DrugBank: DB14577
• PDB chain: 7ce9 Chain G Residue 701

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7ce9 Mechanism of Pyrroloquinoline Quinone-Dependent Hydride Transfer Chemistry from Spectroscopic and High-Resolution X-ray Structural Studies of the Methanol Dehydrogenase from Methylococcus capsulatus (Bath).
• Resolution: 2.2 Å
• Binding residue (original residue number in PDB): E205 N289 D331
• Binding residue (residue number reindexed from 1): E177 N261 D303
• Annotation score: 4

Enzymatic activity

• Catalytic site (original residue number in PDB): E205 N289 D331
• Catalytic site (residue number reindexed from 1): E177 N261 D303

Gene Ontology

Molecular Function

• GO:0005509 calcium ion binding
• GO:0016491 oxidoreductase activity
• GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
• GO:0046872 metal ion binding

Cellular Component

• GO:0016020 membrane
• GO:0030288 outer membrane-bounded periplasmic space

External links

• PDB: RCSB:7ce9, PDBe:7ce9, PDBj:7ce9
• PDBsum: 7ce9
• PubMed: 33629832
• UniProt: Q60AR6