Structure of PDB 6yov Chain G Binding Site BS01

Receptor Information

>6yov Chain G (length=110) Species: 9606 (Homo sapiens)

GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEY
LTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGV
LPNIQAVLLP

Ligand information

>6yov Chain I (length=131)

ctgcaggccgctcaattggtcgtagacagctctagcaccgcttaaacgca
cgtacgcgctgtcccccgcgttttaaccgccaaggggattactccctagt
ctccaggcctttgttatgcaaatacatcctg

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6yov Mechanisms of OCT4-SOX2 motif readout on nucleosomes.
• Resolution: 3.42 Å
• Binding residue (original residue number in PDB): R43 V44 G45 A46 R78
• Binding residue (residue number reindexed from 1): R35 V36 G37 A38 R70

Gene Ontology

Molecular Function

• GO:0003677 DNA binding
• GO:0005515 protein binding
• GO:0030527 structural constituent of chromatin
• GO:0031492 nucleosomal DNA binding
• GO:0046982 protein heterodimerization activity

Biological Process

• GO:0006325 chromatin organization
• GO:0008285 negative regulation of cell population proliferation
• GO:0031507 heterochromatin formation
• GO:0061644 protein localization to CENP-A containing chromatin

Cellular Component

• GO:0000786 nucleosome
• GO:0005634 nucleus
• GO:0005694 chromosome
• GO:0043505 CENP-A containing nucleosome
• GO:0070062 extracellular exosome

External links

• PDB: RCSB:6yov, PDBe:6yov, PDBj:6yov
• PDBsum: 6yov
• PubMed: 32327602
• UniProt: P04908|H2A1B_HUMAN Histone H2A type 1-B/E (Gene Name=H2AC4)