Structure of PDB 6s8g Chain G Binding Site BS01

Receptor Information
>6s8g Chain G (length=244) Species: 623 (Shigella flexneri) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDAL
GAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRM
QVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMLSISGLHNYV
KYLKGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGIS
FGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMR
Ligand information
Ligand IDLMD
InChIInChI=1S/C26H50O11/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-34-25-23(33)21(31)24(18(16-28)36-25)37-26-22(32)20(30)19(29)17(15-27)35-26/h17-33H,2-16H2,1H3/t17-,18-,19-,20+,21-,22-,23-,24-,25-,26-/m1/s1
InChIKeyUKPROSIGWJBJGA-IWODYCRQSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCCOC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
CACTVS 3.370CCCCCCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O
ACDLabs 12.01O(CCCCCCCCCCCCCC)C2OC(C(OC1OC(CO)C(O)C(O)C1O)C(O)C2O)CO
CACTVS 3.370CCCCCCCCCCCCCCO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O
FormulaC26 H50 O11
Nametetradecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside;
n-Tetradecyl-b-D-maltopyranosid
ChEMBL
DrugBank
ZINCZINC000098209120
PDB chain6s8g Chain F Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6s8g Cryo-EM structures of lipopolysaccharide transporter LptB2FGC in lipopolysaccharide or AMP-PNP-bound states reveal its transport mechanism.
Resolution3.5 Å
Binding residue
(original residue number in PDB)
G306 V310
Binding residue
(residue number reindexed from 1)
G192 V196
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0015920 lipopolysaccharide transport
GO:0055085 transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0043190 ATP-binding cassette (ABC) transporter complex

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6s8g, PDBe:6s8g, PDBj:6s8g
PDBsum6s8g
PubMed31519889
UniProtA0A0H2V3J7

[Back to BioLiP]