Structure of PDB 3m85 Chain G Binding Site BS01

Receptor Information
>3m85 Chain G (length=258) Species: 2234 (Archaeoglobus fulgidus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MPEDILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSAL
VKLGDTQVVVGVKMQPGEPAPDTPDRGVIIVNAELVPLASPTFEPGPPDE
NSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLD
ASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKYLVDP
SREEMSVGDTTLTITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCAR
KLREKFKE
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3m85 Quantitative analysis of processive RNA degradation by the archaeal RNA exosome
Resolution3.0 Å
Binding residue
(original residue number in PDB)		I80 R107 R114
Binding residue
(residue number reindexed from 1)		I80 R107 R114
Enzymatic activity
Enzyme Commision number 3.1.13.-
Gene Ontology
Biological Process
GO:0006401 RNA catabolic process
GO:0016075 rRNA catabolic process
Cellular Component
GO:0000177 cytoplasmic exosome (RNase complex)
GO:0000178 exosome (RNase complex)
GO:0005737 cytoplasm

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3m85, PDBe:3m85, PDBj:3m85
PDBsum3m85
PubMed20392821
UniProtO29756|RRP42_ARCFU Exosome complex component Rrp42 (Gene Name=rrp42)

[Back to BioLiP]