Structure of PDB 5lzu Chain FF Binding Site BS01

Receptor Information

>5lzu Chain FF (length=185) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRK
AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLV
NAIINSGPREDSTRIRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTI
AECLADELINAAKGSSNSYAIKKKDELERVAKSNR

Ligand information

>5lzu Chain 3 (length=75) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

gcccggauagcucagcuguagagcaucagacuuuuaaucugaggguccag
gguucaagucccuguucgggcgcca

<<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>>....

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5lzu Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.
Resolution	3.75 Å
Binding residue (original residue number in PDB)	R136 R198 S202
Binding residue (residue number reindexed from 1)	R117 R179 S183

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003729	mRNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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External links

PDB	RCSB:5lzu, PDBe:5lzu, PDBj:5lzu
PDBsum	5lzu
PubMed	27863242
UniProt	G1TFM5\|RS5_RABIT Small ribosomal subunit protein uS7 (Gene Name=RPS5)

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