Structure of PDB 6sga Chain FB Binding Site BS01

Receptor Information

>6sga Chain FB (length=377) Species: 5702 (Trypanosoma brucei brucei)

ELYVPGQQIIPPGLTRYRVDVQYQGNDFDGWWKSTTRQLSRYHARTVLEE
ALAVALDVNTVRVVAGVIPEVGVSVRRLCCHVDVPSHIELQPRTVIQRAT
MWMEKRQQPLAILSYRRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAG
LQWHVDRHLDVDRMKRFAKALEGTKDFGYFADPKMANALRRAAMSPGGFS
TGAVTEENFQPKATGESHRVTRGKAPKVTMEKGPSNLDRAAALPTFNEYG
QRVVQPGAHGKEYYRVATNLPTVRTVDRLDVVRQDDEVLIWFVGRSFLRH
QIRNMVSVLKAAGHGLWNDLELQQALQSGFEPSRHRFKRERFPTAPAYGL
TLWDVEYPDQHRDDYVQFVDSGPYEQV

Ligand information

>6sga Chain CA (length=463)

uaaauuauggucaauuguuaguauucauauuaauuuuuuuaaauguuuua
ucauuuuauaaagguuuauuuuugaaagauuuuuuguauaaaauuuuagg
aauaguuaauaauaauuuauaauuuugauuagauuguuuuguuaaugcua
uuagauggguguggaaaaauaaaaaaaauaauuaauauauaucaauaaua
aauuaaauuaaucuauuagucagaaauggaugccagccguugcgguaauu
ucuaugcuuuuaaauauuauacaauuaucauauuaaauuguuaagugcug
auuuaaccaauaaaaauauaaauaauuuuuauuuguuuuuaaacaccauu
agguauaugcaaauauaaaauuauaguaauuauagaaauuaaaaagcacc
aauuuuuauaauaaaaauaacgugcaguaauuaauauauuuauaaaaaua
uauuuuuuuuuuu

...........................<<<<......<<<........<.
..>..........<<<.............................<....
.<<...<<<.......>>>..>>........>........<<....>>..
...>>>...........................................>
>>.........................<<<..<<.........>>....>
>>..........>>>>.......<<.<<........<<<<..........
.......>>>>..................<<<<<<<........<<<...
.>>>....>>>>>>>....>>.>>....<<.......>>.......<<<.
...<<<<......>>>>....>>>........<<<<<<<<<....>>>>>
>>>>.........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6sga Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.
• Resolution: 3.1 Å
• Binding residue (original residue number in PDB): W202 K203 S204 T205 R207 G271 I273 E275 V276 R331 H332 R337 K389 M390 N392 R395 R396 S400 P401 G402 G403 T426 R427 G428 A430 P431 K432 H464 R479 R500 S501 F502 R504 S538 R539 H540 R541 R544
• Binding residue (residue number reindexed from 1): W32 K33 S34 T35 R37 G66 I68 E70 V71 R126 H127 R132 K184 M185 N187 R190 R191 S195 P196 G197 G198 T221 R222 G223 A225 P226 K227 H259 R274 R295 S296 F297 R299 S333 R334 H335 R336 R339

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 16:36:06 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6sga', asym_id = 'FB', bs = 'BS01', title = 'Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6sga', asym_id='FB', bs='BS01', title='Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0001522,0003723,0009451,0009982', uniprot = '', pdbid = '6sga', asym_id = 'FB'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0001522,0003723,0009451,0009982', uniprot='', pdbid='6sga', asym_id='FB')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>