Structure of PDB 8ysx Chain F Binding Site BS01

Receptor Information
>8ysx Chain F (length=198) Species: 9615 (Canis lupus familiaris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TIMAVEFDGGVVVGSDSRVSAGEAVVNRAFNKLSPLHQHIYCALSGSAAD
AQAMADMAAYQLELHGLELEEPPLVLAAANVVRNISYKYREDLSAHLMIA
GWDRRDGGQVYGTMGGMLTRQPFAIGGSGSTYIYGYVDAAYKPGMSPEEC
RSFTTNAIALAMNRDGSSGGVIHLVTITAAGVDYQVILGNELPKFYDE
Ligand information
Ligand IDA1L0D
InChIInChI=1S/C20H38BN5O5/c1-14(17(22)13-27)31-21(29,30)19(15-8-4-2-5-9-15)23-20(28)18-12-26(25-24-18)16-10-6-3-7-11-16/h12,14-17,19,27,29H,2-11,13,22,30H2,1H3,(H,23,28)/t14-,17-,19+/m1/s1
InChIKeyFHUGSJNRJRMQPB-BJZITVGISA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH](O[B-](O)([OH2+])[CH](NC(=O)c1cn(nn1)C2CCCCC2)C3CCCCC3)[CH](N)CO
CACTVS 3.385C[C@@H](O[B-](O)([OH2+])[C@@H](NC(=O)c1cn(nn1)C2CCCCC2)C3CCCCC3)[C@H](N)CO
OpenEye OEToolkits 2.0.7B(C(C1CCCCC1)NC(=O)c2cn(nn2)C3CCCCC3)([OH2])(O)OC(C)C(CO)N
OpenEye OEToolkits 2.0.7B([C@H](C1CCCCC1)NC(=O)c2cn(nn2)C3CCCCC3)([OH2])(O)O[C@H](C)[C@@H](CO)N
FormulaC20 H38 B N5 O5
Name[(2~{R},3~{R})-3-azanyl-4-oxidanyl-butan-2-yl]oxy-[(~{R})-cyclohexyl-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]methyl]-$l^{3}-oxidanyl-oxidanyl-boron
ChEMBL
DrugBank
ZINC
PDB chain8ysx Chain F Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8ysx Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
T2 V20 S21 F31 K33 L45 S46 G47 A49 G128 S129 S168 S169
Binding residue
(residue number reindexed from 1)
T1 V19 S20 F30 K32 L44 S45 G46 A48 G127 S128 S167 S168
Annotation score1
Gene Ontology
Biological Process
GO:2000116 regulation of cysteine-type endopeptidase activity
Cellular Component
GO:0000502 proteasome complex
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:8ysx, PDBe:8ysx, PDBj:8ysx
PDBsum8ysx
PubMed38906067
UniProtA0A8C0T7K4

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