Structure of PDB 8q4f Chain F Binding Site BS01

Receptor Information
>8q4f Chain F (length=103) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYP
INKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEAS
PMV
Ligand information
>8q4f Chain A (length=1512) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa
cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga
guggcggacgggugaguaaugucugggaaacugccugauggagggggaua
acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg
gggccucuugccaucggaugugcccagaugggauuagcuaguaggugggg
uaacggcucaccuaggcgacgaucccuagcuggucugagaggaugaccag
ccacacuggaacugagacacgguccagacuccuacgggaggcagcagugg
ggaauauugcacaaugggcgcaagccugaugcagccaugccgcguguaug
aagaaggccuucggguuguaaaguacuucagcggggaggaagggaguaaa
guuaauaccuuugcucauugacguuacccgcagaagaagcaccggcuaac
uccggccagcagcccgguaauacggagggugcaagcguuaaucggaauua
cugggcguaaagcgcacgcaggcgguuuguuaagucagaugugaaauccc
cgggcucaaccugggaacugcaucugauacuggcaagcuugagucucgua
gagggggguagaauuccagguguagcggugaaaugcguagagaucuggag
gaauaccgguggcgaaggcggcccccuggacgaagacugacgcucaggug
cgaaagcguggggagcaaacaggauuagauacccugguaguccacgccgu
aaacgaugucgacuuggagguugugccggcguggcuuccggagcuaacgc
guuaagucgaccgccuggggaguacggccgcaagguuaaaacucaaauga
auugacgggggcccgcacaagcgguggagcaugugguuuaauucgauaac
gcgaagaaccuuaccuggucuugacauccacggaaguuuucagagaugag
aaugugccuucgggaaccgugagacaggugcugcauggcugucgucagcu
cguguugugaaauguuggguuaagucccgcaacgagcgcaacccuuaucc
uuuguugccagcgguccggccgggaacucaaaggagacugccagugauaa
acuggaggaagguggggaugacgucaagucaucaugcccuuacgaccagg
gcacacacgugcuacaauggcgcauacaaagagaagcgaccucgcgagag
caagcggaccucauaaagugcgucguaguccggauuggagucugcaacuc
gacuccaugaagucggaaucgcuaguaaucguggaucagaaugccacggu
gaauacguucccgggccuuguacacaccgcccgucacaccaugggagugg
guugcaaaagaaguagguagcuuaaccuucgggagggcgcuuaccacuuu
gugauucaugacuggggugaagucguaacaagguaaccguaggggaaccu
gcgguuggauca
.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....
<<<.<<<..<<<..<<.<...<<<<<<............>>>.>>>.>..
>>>>>......<<.......<<<<<<<..<<...<<<<<<<.<.<<....
.<<<<<......>>>>>......>>.>.....<<<....>>.>...<<<<
<<.>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<..<<<<<<<..
.......>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>
>.>>.<<<<.<<.........>>>>>>.<<<<....>>>>...>>>>>>.
........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.
......<<.<...>>>......>>>>..<.<<..<......<.<<<<<<<
.........>>>>>>>.>........>..>>....>..<<<<<(((...<
<<<<.......)))........>>>>>>>>>>..>>>>>>>>>.......
...<<<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<
<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<.
..<<<<<<<....<<<<<<<<...<<<......>>>......>>>>>>>.
>..........<<....>>.>>>>>>>..>>>>.>>>>...>>>...>>>
>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>...
.......<<<<<<.<<<<<<<<<<......>>>>>>>>>>..<<..))>>
.....>>>>>>.>>>.<<<......<<<<....>>>>....>>>..))))
.]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<.....
.>>..........<<<<<<<......<<.<<<<.....<<<......>>>
......<<....>>..>>>>..>>..<.......<<<<<<.......<<<
<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<
<<<<...<...<<.......>>.>....>>>>>>>.....<<<<<.....
>>>>>........>>>>.........>>>...>>>....>...>>>>>>>
..>>.>>>>>>>>.....<<<<.........<<..<<...<<<....>>>
...>>....>>.........>>>>......<....<<<<<<<........
>>>>>>>....>.....>>>>>>.....<<<<<<.........>>>>>>.
......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<
<<<<<<<<....<<<<<<.<<<<..<<....>>.>>>>>>>>>>...>>>
>>>>>>>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>
>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q4f Structure of arbekacin bound Escherichia coli 70S ribosome
Resolution3.1 Å
Binding residue
(original residue number in PDB)
R2 Y4 Y49 R86 V89 M90 R91
Binding residue
(residue number reindexed from 1)
R2 Y4 Y49 R86 V89 M90 R91
External links
PDB RCSB:8q4f, PDBe:8q4f, PDBj:8q4f
PDBsum8q4f
PubMed
UniProtP02358|RS6_ECOLI Small ribosomal subunit protein bS6 (Gene Name=rpsF)

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