Structure of PDB 8pn5 Chain F Binding Site BS01

Receptor Information

>8pn5 Chain F (length=344) Species: 1396 (Bacillus cereus)

GGGASAPGVYVTPKNSVSSDIISIDWSPVQTAPYTYWAVHNWNQGGEAGG
YAGFQQQSGFDENGKRTLHFAVWDPISSKEAIKAEYVSPTSVASNFGGEG
TGLKIQTTYDWKNYNWYRMTMRSWQENGHTKFGQWLKDVSKNQWKLIGIM
DFPVPNVTFNYGQTLFQADWLGNGQDVREARVKNGYGRNISDKKWTSWNT
QSIEGQEPLNNNWDGGATSEYLWFKAGGDSRSTIGTGKTFTLNQPSQPEI
GKLDYDVKSTYYENEKLNITWQLKDSSTPQFKGKIEIYNNENMTGQPINV
INDIKSYQNGISQSISLPTNTYAKIVLTDIFDQTVEKKVKIKNE

Ligand information

>8pn5 Chain N (length=10) Species: 32630 (synthetic construct)

ATTTTPAPAK

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8pn5 A family of di-glutamate mucin-degrading enzymes that bridges glycan hydrolases and peptidases
• Resolution: 1.72 Å
• Binding residue (original residue number in PDB): Y42 Q76 Y83 E131 W202
• Binding residue (residue number reindexed from 1): Y10 Q44 Y51 E99 W170

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Nov 25 02:05:55 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8pn5', asym_id = 'F', bs = 'BS01', title = 'A family of di-glutamate mucin-degrading enzymes that bridges glycan hydrolases and peptidases'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8pn5', asym_id='F', bs='BS01', title='A family of di-glutamate mucin-degrading enzymes that bridges glycan hydrolases and peptidases')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0004553,0005576,0005975,0030246', uniprot = '', pdbid = '8pn5', asym_id = 'F'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005576,0005975,0030246', uniprot='', pdbid='8pn5', asym_id='F')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>