Structure of PDB 8phi Chain F Binding Site BS01

Receptor Information
>8phi Chain F (length=453) Species: 11259 (Human respiratory syncytial virus A2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCDAKVKL
IKQELDKYKNAVTELQLLMQSFLGFLLGVGSAIASGVAVCKVLHLEGEVN
KIKSALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKQLLPILNKQSCSIS
NIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMP
ITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQLPLYGVIDTPCWK
LHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRV
FCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVS
CYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGK
SLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLSA
IGG
Ligand information
Ligand ID336
InChIInChI=1S/C27H31Br2ClN4O2/c28-20-12-19-2-1-18-13-21(30)14-22(29)24(18)25(26(19)32-15-20)17-5-9-33(10-6-17)23(35)11-16-3-7-34(8-4-16)27(31)36/h12-17,25H,1-11H2,(H2,31,36)/t25-/m1/s1
InChIKeyDHMTURDWPRKSOA-RUZDIDTESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1c(cc(c2c1CCc3cc(cnc3[C@@H]2C4CCN(CC4)C(=O)CC5CCN(CC5)C(=O)N)Br)Br)Cl
CACTVS 3.341NC(=O)N1CCC(CC1)CC(=O)N2CCC(CC2)[CH]3c4ncc(Br)cc4CCc5cc(Cl)cc(Br)c35
ACDLabs 10.04O=C(N4CCC(C3c1c(Br)cc(Cl)cc1CCc2cc(Br)cnc23)CC4)CC5CCN(C(=O)N)CC5
OpenEye OEToolkits 1.5.0c1c(cc(c2c1CCc3cc(cnc3C2C4CCN(CC4)C(=O)CC5CCN(CC5)C(=O)N)Br)Br)Cl
CACTVS 3.341NC(=O)N1CCC(CC1)CC(=O)N2CCC(CC2)[C@H]3c4ncc(Br)cc4CCc5cc(Cl)cc(Br)c35
FormulaC27 H31 Br2 Cl N4 O2
Name4-{2-[4-(3,10-DIBROMO-8-CHLORO-6,11-DIHYDRO-5H-BENZO[5,6]CYCLOHEPTA[1,2-B]PYRIDIN-11-YL)PIPERIDIN-1-YL]-2-OXOETHYL}PIPERIDINE-1-CARBOXAMIDE;
SCH66336
ChEMBLCHEMBL298734
DrugBankDB06448
ZINCZINC000003950115
PDB chain8phi Chain F Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8phi Drug repurposing screen identifies lonafarnib as respiratory syncytial virus fusion protein inhibitor.
Resolution2.289 Å
Binding residue
(original residue number in PDB)
F137 F140 F488
Binding residue
(residue number reindexed from 1)
F72 F75 F423
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0019064 fusion of virus membrane with host plasma membrane

View graph for
Biological Process
External links
PDB RCSB:8phi, PDBe:8phi, PDBj:8phi
PDBsum8phi
PubMed38332002
UniProtP03420|FUS_HRSVA Fusion glycoprotein F0 (Gene Name=F)

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