Structure of PDB 8jp7 Chain F Binding Site BS01

Receptor Information
>8jp7 Chain F (length=313) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRG
SVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSA
DLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQ
RDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQ
GHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQE
EFEHFQQELDKKKEEFQKGHPESVGDRELRQVFEGQNRIHLEIKQLNRQL
DMILDEQRRYVSS
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8jp7 Chain F Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8jp7 Structure of full-length ERGIC-53 in complex with MCFD2 for cargo transport.
Resolution3.51 Å
Binding residue
(original residue number in PDB)		D152 F154 N156 D181
Binding residue
(residue number reindexed from 1)		D111 F113 N115 D140
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8jp7, PDBe:8jp7, PDBj:8jp7
PDBsum8jp7
PubMed38493152
UniProtP49257|LMAN1_HUMAN Protein ERGIC-53 (Gene Name=LMAN1)

[Back to BioLiP]