Structure of PDB 8i02 Chain F Binding Site BS01

Receptor Information

>8i02 Chain F (length=235) Species: 4896 (Schizosaccharomyces pombe) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

IRNVDYCSACGGRGLFICCEGCPCSFHLSCLEPPLTPENIPEGSWFCVTC
SIKSHHPPKHPLSIWSQLYDWIDSQNPSQYRLPDDLVHYFHGISRGDTGA
YKETEGEITNLAYCGYCSKPSMGACWVYGCQLCDTFYHKNCKEHAKKCSH
DSIGKKGMRVPFPRLPVSCLYKVSEDGLIKDFLYAIGIEAKKFNNERKKR
ELEVIPPDVKSALLPARTHPNLPIALRTLFNKART

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

8i02 Chain F Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8i02 Two assembly modes for SIN3 histone deacetylase complexes.
Resolution	2.9 Å
Binding residue (original residue number in PDB)	C135 C137
Binding residue (residue number reindexed from 1)	C22 C24
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003674	molecular_function
GO:0005515	protein binding
GO:0046872	metal ion binding

	Biological Process
GO:0006357	regulation of transcription by RNA polymerase II
GO:0045815	transcription initiation-coupled chromatin remodeling

	Cellular Component
GO:0005634	nucleus
GO:0005694	chromosome
GO:0005829	cytosol
GO:0032221	Rpd3S complex
GO:0032991	protein-containing complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8i02, PDBe:8i02, PDBj:8i02
PDBsum	8i02
PubMed	37076472
UniProt	Q09819\|YAC5_SCHPO Uncharacterized protein C16C9.05 (Gene Name=SPAC16C9.05)

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