Structure of PDB 8hmg Chain F Binding Site BS01

Receptor Information

>8hmg Chain F (length=289) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWT
GARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDAST
HDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTI
VEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLS
IVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETE
FALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPM

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

8hmg Chain F Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	8hmg Ca2+-based Allosteric Switches and Shape Shifting in RGLG1 VWA domain
Resolution	2.81 Å
Binding residue (original residue number in PDB)	D304 Q316 E344
Binding residue (residue number reindexed from 1)	D218 Q230 E258
Annotation score	4

Enzymatic activity

Enzyme Commision number

2.3.2.27: RING-type E3 ubiquitin transferase.

External links

PDB	RCSB:8hmg, PDBe:8hmg, PDBj:8hmg
PDBsum	8hmg
PubMed
UniProt	Q9LY87\|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 (Gene Name=RGLG2)

[Back to BioLiP]