Structure of PDB 8bto Chain F Binding Site BS01

Receptor Information
>8bto Chain F (length=473) Species: 1053222 (Bacillus cereus MSX-D12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKMNPIVELFIKDFTKEVMEENAAIFAGAGLSMSVGYVSWAKLLEPIAQE
IGLDVNKENDLVSLAQYYCNENQGNRGRINQIILDEFSRKVDLTENHKIL
ARLPIHTYWTTAYDRLIEKALEEENKIADVKYTVKQLATTKVKRDAVVYK
MHGDVEHPSEAVLIKDDYEKYSIKMDPYIKALSGDLVSKTFLFVGFSFTD
PNLDYILSRVRSAYERDQRRHYCLIKKEERRPDELEADFEYRVRKQELFI
SDLSRFNIKTIVLNNYNEITEILQRIENNIKTKTVFLSGSAVEYNHWETE
HAEQFIHQLSKELIRKDFNIVSGFGLGVGSFVINGVLEELYMTIDDDRLI
LRPFPQGKKGEEQWDKYRRDMITRTGVSIFLYGNKIDKGQVVKAKGVQSE
FNISFEQNNYVVPVGATGYIAKDLWNKVNEEFETYYPGADARMKKLFGEL
NNEALSIEELINTIIEFVEILSN
Ligand information
Ligand IDOJC
InChIInChI=1S/C15H21N5O13P2/c16-12-7-13(18-3-17-12)20(4-19-7)14-10(23)11-6(30-14)2-29-35(26,27)33-34(24,25)28-1-5-8(21)9(22)15(31-5)32-11/h3-6,8-11,14-15,21-23H,1-2H2,(H,24,25)(H,26,27)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15+/m1/s1
InChIKeyNDSLKXAJVDJCEG-ZQSHOCFMSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH](O[CH]4[CH]3O)[CH](O)[CH]5O
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(OP(=O)(OC[C@@H]5[C@H]([C@H]([C@@H](O5)O4)O)O)O)O)O)N
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OP(=O)(OCC5C(C(C(O5)O4)O)O)O)O)O)N
ACDLabs 12.01Nc1ncnc2c1ncn2C1OC2COP(=O)(O)OP(=O)(O)OCC3OC(OC2C1O)C(O)C3O
CACTVS 3.385Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P](O)(=O)O[P](O)(=O)OC[C@H]5O[C@@H](O[C@H]4[C@H]3O)[C@H](O)[C@@H]5O
FormulaC15 H21 N5 O13 P2
Name(2R,3R,3aS,5S,6R,7S,8R,11R,13S,15aR)-2-(6-amino-9H-purin-9-yl)-3,6,7,11,13-pentahydroxyoctahydro-2H,5H,11H,13H-5,8-epoxy-11lambda~5~,13lambda~5~-furo[2,3-g][1,3,5,9,2,4]tetraoxadiphosphacyclotetradecine-11,13-dione
ChEMBL
DrugBank
ZINC
PDB chain8bto Chain F Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8bto Activation of Thoeris antiviral system via SIR2 effector filament assembly
Resolution2.96 Å
Binding residue
(original residue number in PDB)
G289 S290 G325 L326 F357 Q359 W367 R371 K388 A397 G399 E403
Binding residue
(residue number reindexed from 1)
G289 S290 G325 L326 F354 Q356 W364 R368 K385 A394 G396 E400
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.2.5: NAD(+) glycohydrolase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016787 hydrolase activity
Biological Process
GO:0051607 defense response to virus
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8bto, PDBe:8bto, PDBj:8bto
PDBsum8bto
PubMed38383786
UniProtJ8G6Z1|THSA_BACCS NAD(+) hydrolase ThsA (Gene Name=thsA)

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