Structure of PDB 7qvi Chain F Binding Site BS01

Receptor Information
>7qvi Chain F (length=447) Species: 32630 (synthetic construct) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RAQYEAGVRPYRETYYDPDYEPKDTDLLCAFRITPKPGVPMEEAAAAVAA
ESSTGTWTEVWSNLLTDLERYKARCYRIEGDVAYIAYPLDLFEEGSIVNI
MSSIVGNVFGFKAVQALRLEDMRIPVAYLKTFPGPPTGIQVERDRLNKYG
RPLLGGTIKPKLGLSAKEYARVVYECLRGGLDTTKDDENLNSQPFNRWRD
RFLYVMEAVRKAEAETGERKGHWLNVTAGSTEEMLKRAEFAAELGSRYIM
VDFLTAGFAAFASVRRRAEELGLMLHCHRAMHAVFDRQPNHGIHFRVLAK
WLRMVGGDHVHTGTVVGKLEGDRAETLGIADLLREDYVPADPGRGLFFDQ
DWAGLKPVFPVASGGIHVWHVPDLVSIFGDDAFFLFGGGTHGHPRGSRAG
ATANRVAVEAVVQARNEGRDILAEGREILEEAARWCPELREAMELWG
Ligand information
Ligand IDCAP
InChIInChI=1S/C6H14O13P2/c7-3(1-18-20(12,13)14)4(8)6(11,5(9)10)2-19-21(15,16)17/h3-4,7-8,11H,1-2H2,(H,9,10)(H2,12,13,14)(H2,15,16,17)/t3-,4-,6-/m1/s1
InChIKeyITHCSGCUQDMYAI-ZMIZWQJLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C(C(C(COP(=O)(O)O)(C(=O)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[CH](CO[P](O)(O)=O)[CH](O)[C](O)(CO[P](O)(O)=O)C(O)=O
ACDLabs 10.04O=P(O)(O)OCC(O)C(O)C(O)(C(=O)O)COP(=O)(O)O
OpenEye OEToolkits 1.5.0C([C@H]([C@H]([C@](COP(=O)(O)O)(C(=O)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@](O)(CO[P](O)(O)=O)C(O)=O
FormulaC6 H14 O13 P2
Name2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain7qvi Chain F Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7qvi Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		T159 K161 K187 H280 R281 H313 K320 L321 S365 G366 G389 G390
Binding residue
(residue number reindexed from 1)		T157 K159 K185 H278 R279 H311 K318 L319 S363 G364 G387 G388
Annotation score2
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 00:55:38 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7qvi', asym_id = 'F', bs = 'BS01', title = 'Evolution of increased complexity and specificity at the dawn of form I Rubiscos.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7qvi', asym_id='F', bs='BS01', title='Evolution of increased complexity and specificity at the dawn of form I Rubiscos.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0000287,0015977,0016984', uniprot = '', pdbid = '7qvi', asym_id = 'F'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0015977,0016984', uniprot='', pdbid='7qvi', asym_id='F')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>