Structure of PDB 7pd3 Chain F Binding Site BS01 |
|
|
| >7pd3 Chain A (length=1280)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
gcuaaaccuagccccaaacccccaccuuacuaccagacaaccuuagccaa
accauuuacauaaaguauaggcgauagaaauugggcgcaauagauauagu
accgcaagggaaagaugaaaaaaccaagcauaauauagcaaggacuaacc
ccuauaccuucugcauaaugaauuaacuagaaauaacuuugcaaggagag
ccaaagcuaagacccccgaaaccagacgagcuaccuaagaacagcuaaaa
gagcacacccgucuauguagcaaaauagugggaagauuuauagguagagg
cgacaaaccuaccgagccuggugauagcugguuguccaagauagaaucuu
aguucaacuuuaaauuugcccacagaaccaaauccccuuguaaauuuaac
uguuaguccaaagaggaacagcucuuuggacacuaggaaaaaaccuugua
gagagaguaaaaaauuuaacacccauaguaggccuaaaagcagccaccaa
uuaagaaagcguucaagcucaacacaaaaaucccaaacauauaacugaac
uccucacacccaauuggaccaaucuaucacccuauagaagaacuaauguu
aguauaaguaacaugaaaacauucuccuccgcauaagccugcgucagcaa
cugacaauuaacagcccaauaucuacaaucaaccaacaagucauuauuac
ccucacugucaacccaacacaggcaugcucauaaggaaagguuaaaaaaa
guaaaaggaacucggcaaaucuuaccccgccuguuuaccaaaaacaucac
cucuagcaucaccaguauuagaggcaccgccugcccagugacacauguuu
aacggccgcgguacccuaaccgugcaaagguagcauaaucacuuguuccu
uaaauagggaccuguaugaauggcaccacgaggguucagcugucucuuac
uuuuaaccagugaaauugaccugcccgugaagaggcgggcauaacacagc
aagacgagaagacccuauggagcuuuaauuuauuaaugcaccugcauuaa
aaauuucgguuggggcgaccucggagcagaacccaaccuccgagcaguac
augcuaagacuucaccagucaaagcgaaccucaauugauccaauaacuug
accaacggaacaaguuacccuagggauaacagcgcaauccuauucuagag
uccauaucaacaauaggguuuacgaccucgauguuggaucaggacauccc
gauggugcagccgcuauuaaagguucguuu |
<<<.......<<<<..................................<.
.....>.....<.....<<.....>>....>..>>.>>............
.<<....>>.................>>>...........<<<.......
>>>...<.<........>.>.<<<<<<.........<<<.<<..<<....
>>...>>.>>>...<<.<..<<<<<.<.....<<<<<.<<<..<<<....
.>>>...<<<..<<<<........>>>>.>>>....>>>.>>>>>...<<
.......>>......>.>>>>...>..>.>>..<<<<<<....<<<<...
.>>>><<<.<<<<<<<.<<.....<<......>>.....>>.>>>>>>>.
.>>>.<<<<<<<<<<......>>>>>>>>>>...<<<......>>>....
<<<.<<<...<..............<....<<<.........>>>....>
.......<<<......>>>..........................>...>
>>>>>........>>>>>>...<<<<<......>>>>>.........>>>
>>><......<<..<<<....>>><<<<..<<<<........<<<<<...
>>>>>......<<<...<<<<.......................>>>>..
.....>>>.....<<......>>.>>>>.....>>>>..<<<<...<<<<
<<<<.<<.........<......<<<<<<..<<<.........>>>...<
<<<<<.............>>>>>>....<<<.......<<<.....<<..
......<<<<<<......>>>>>>........>>....>>>...<<<<<<
.....>>>>>>..........>>>....>>.>>>>.....>..>>.>>>>
>>>>>>>>.>>.....>.....<<<<<........>>>>>..........
.............<<<<.<<<<<<..<<<<<.<<<<<<......>>>>>>
>>>>>..<<<.......>>><<<<<<...........>>>>>>..<<...
..<<<..<<<<.....>>>>..>>>....>>.........<<<....>>>
............>>>>..>>>>>>.......<<<..<.<<<<<<...<<.
......>>...>>>>>>...>.>>.>.....................<<.
<<<<<<......>>>>>>...>>....... |
|
| Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
| PDB | 7pd3 Visualizing formation of the active site in the mitochondrial ribosome. |
| Resolution | 3.4 Å |
Binding residue
(original residue number in PDB) | R92 I95 H97 M101 K104 N105 R108 Y111 K113 T114 K115 R117 A118 V120 R121 G122 R125 K126 Q130 K131 G134 R135 A136 R137 H138 G139 R142 P144 L145 W146 R147 G148 V151 H153 P155 P158 Y161 Y163 M164 P166 M167 K168 V169 R170 L172 K255 R281 P282 L283 P285 |
Binding residue
(residue number reindexed from 1) | R48 I51 H53 M57 K60 N61 R64 Y67 K69 T70 K71 R73 A74 V76 R77 G78 R81 K82 Q86 K87 G90 R91 A92 R93 H94 G95 R98 P100 L101 W102 R103 G104 V107 H109 P111 P114 Y117 Y119 M120 P122 M123 K124 V125 R126 L128 K211 R237 P238 L239 P241 |
|
|
| Enzyme Commision number |
? |
|
|
|
|
|
