Structure of PDB 7op9 Chain F Binding Site BS01
Receptor Information
>7op9 Chain F (length=233) Species:
85962
(Helicobacter pylori 26695) [
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MTPHINAKIGDFYPQCLLCGDPLRVSYIAKKFLQDAKEITNVRNMLGFSG
KYKGRGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGL
KDIIMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKV
GNVFSSDFFYSFETHAFDLMAKYNHLAIEMEAAGLYATAMELNAKALCLC
SVSDHLITKEALSPKERVESFDNMIILALEMMS
Ligand information
Ligand ID
06K
InChI
InChI=1S/C5H2Cl2N4/c6-3-2-4(9-1-8-2)11-5(7)10-3/h1H,(H,8,9,10,11)
InChIKey
RMFWVOLULURGJI-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.385
Clc1nc(Cl)c2[nH]cnc2n1
OpenEye OEToolkits 2.0.7
c1[nH]c2c(n1)nc(nc2Cl)Cl
Formula
C5 H2 Cl2 N4
Name
2,6-bis(chloranyl)-7H-purine;
2,6-dichloropurine
ChEMBL
CHEMBL1256006
DrugBank
ZINC
ZINC000013516915
PDB chain
7op9 Chain F Residue 301 [
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Receptor-Ligand Complex Structure
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PDB
7op9
Interactions of 2,6-substituted purines with purine nucleoside phosphorylase from Helicobacter pylori in solution and in the crystal, and the effects of these compounds on cell cultures of this bacterium.
Resolution
1.5 Å
Binding residue
(original residue number in PDB)
T90 G92 F159 I178 E179 M180 D204
Binding residue
(residue number reindexed from 1)
T90 G92 F159 I178 E179 M180 D204
Annotation score
1
Enzymatic activity
Enzyme Commision number
2.4.2.1
: purine-nucleoside phosphorylase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0004731
purine-nucleoside phosphorylase activity
GO:0016757
glycosyltransferase activity
GO:0016763
pentosyltransferase activity
Biological Process
GO:0006139
nucleobase-containing compound metabolic process
GO:0006152
purine nucleoside catabolic process
GO:0009116
nucleoside metabolic process
GO:0009164
nucleoside catabolic process
Cellular Component
GO:0005829
cytosol
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:7op9
,
PDBe:7op9
,
PDBj:7op9
PDBsum
7op9
PubMed
35437103
UniProt
P56463
|DEOD_HELPY Purine nucleoside phosphorylase DeoD-type (Gene Name=deoD)
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