Structure of PDB 7asp Chain F Binding Site BS01

Receptor Information
>7asp Chain F (length=155) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KFNYSSVMEVPKIDKIVVNMGVGDAVQNSKVLDNAVEELELITGQKPLVT
KAKKSIATFRLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFQGVS
KKAFDNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEARELLA
NFGMP
Ligand information
>7asp Chain Y (length=2723) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuaaguuauuaagggcgcacgguggaugccuuggcacuagaagccaauga
aggacguuacuaacgacgauaugcuuuggggagcuguaaguaagcuuuga
uccagagauuuccgaauggggaaacccagcaugaguuaugucauguuauc
gauauguuagcauaucagaaggcacacccggagaacugaaacaucuuagu
acccggaggaagagaaagaaaauucgauucccuuaguagcggcgagcgaa
acgggaagagcccaaaccaacaaguugcuuguugggguuguaggacacuc
uaugaguuacaaaggacgacauuagacgaaucaucuggaaagaugaauca
aagaagguaauaauccuguagucgaaaauguugucucucuugaguggauc
cugaguacgacggagcacgugaaauuccgucggaaucugggaggaccauc
uccuaaggcuaaauacucucuagugaccgauagugaaccaguaccgugag
ggaaaggugaaaagcaccccggaaggggagugaaauagaaccugaaaccg
ugugcuuacaaguagucagagcccguuaaugggugauggcgugccuuuug
uagaaugaaccggcgaguuacgauuugaugcaagguuaagcaguaaaugu
ggagccguagcgaaagcgagucugaauagggcguuuaguauuuggucgua
gacccgaaaccaggugaucuacccuuggucagguugaaguucagugaaug
gaggaccgaaccgacuuacguugaaaagugagcggaugaacugaggguag
cggagaaauuccaaucgaaccuggagauagcugguucucuccgaaauagc
uuuagggcuagccucaagugaugauuauuggagguagagcacuguuugga
cgaggccgaauucagacaaacuccgaaugccaauuaauuuaacuugggag
ucagaacaugggugauaagguccguguucgaaagggaaacagcccagacc
accagcuaaggucccaaaauauauguuaaguggaaaaggauguggcguug
cccagacaacuaguagucgagugacacugcgccgaaaauguaccggggcu
aaacauauuaccgaagcugugauuguccuuuggacaaugguaggagagcg
uucuaagggcguugaagcaugaucguaaggacauguggagcgcuuagaag
ugagaaugccggugugaguagcgaaagacgggugagaaucccguccaccg
auugacuaagguuuccagaggaaggcucguccgcucuggguuagucgggu
ccuaagcugaggccgacaggcguaggcgauggauaacagguugauauucc
uguaccaccuauaaucgaucgauggggggacgcaguaggauaggcgaagc
gugcgauuggauugcacgucuaagcaguaaggcugaguaggcugagcugu
gauggggagaagacucuucgagucguugauuucacacugccgagaaaagc
cucuagauagaaaauaggugcccguaccgcaaaccgacacagguagucaa
gaugagaauucuaaggugagcgagcgaacucucguuaaggaacucggcaa
aaugaccccguaacuucgggagaaggggugcucuuuaggguuaacgccca
gaagagccgcagugaauaggcccaagcgacuguuuaucaaaaacacaggu
cucugcuaaaccguaaggugauguauaggggcugacgccugcccggugcu
ggaagguuaagaggagugguuagcuucugcgaagcuacgaaucgaagccc
caguaaacggcggccguaacuauaacgguccuaagguagcgaaauuccuu
gucggguaaguuccgacccgcacgaaaggcguaacgauuugggcacuguc
ucaacgagagacucggugaaaucauaguaccugugaagaugcagguuacc
cgcgacaggacggaaagaccccguggagcuuuacuguagccugauauuga
aauucggcacagcuagcuguguuggcuuucuaacccgcaccacuuaucgu
ggugggagacagugucaagcgggcaguuugacuggggcggucgccuccua
aaagguaacggaggcgcucaaagguucccuagaaugguuggaaaucauuc
auagaguguaaaggcauaagggagcuugacugcgagaccuacaagucgag
cagggucgaaagacggacuuagugauccggugguuccgcauggaagggcc
aucgcucaacggauaaaagcuaccccggggauaacaggcuuaucuccccc
aagaguucacaucgacggggagguuuggcaccucgaugucggcucaucgc
auccuggggcuguagucggucccaaggguugggcuguucgcccauuaaag
cgguacgcgagcuggguucagaacgucgugagacaguucggucccuaucc
gucgugggcguaggaaauuugagaggagcuguccuuaguacgggaccggg
auggacauaccucugguguaccaguugucgugccaacggcauagcugggu
agcuauguguggacgggauaagugcugaaagcaucuaagcaugaagcccc
ccucaagaugagauuucccaacuucgguuauaagaucccucaaagaugau
gagguuaauagguucgagguggaagcauggugacauguggagcugacgaa
uacuaaucgaucgaagacuuaau
<<<<<<......<<<<<<<<<<<.....[[..[[<<<<<<<[[<<.....
.<<<<<<.....((.>>>.....<<<...<..<<<)).....>>>.....
>...>>>...>>>....<<<....>>>.....................<<
.................>>.>>.....<.<<......<......>.....
.>>.>............<.....>...<<<<<......<<.....>>...
..>>>>>..(((....<.<..<<<...>>>.>.>.......<<<<<<...
...................<....<<<...<<<<<......>>>>>((..
....<<<.....))>>>...>>>......>..............>>..>>
>>.....<<<<<<<<.........>>>>>>>>......<<<<<..<<<<>
>>>>..)))......]].>>>>>>>.]]...............<<....>
>....]].........<<<<....>>>>..................>>>>
>>>>>>>.......<<<<..<<<<......>>>>..>>>>...<.<....
....>.>.<<.<<<....<<<<<<<.<<<<<..<<<...<<<.....>>>
...>>>...<<....>>..<<<<.....>>>>.....>>>>>.>>>>>>>
..<......<<<<<<.....<<<<<<<<<..<<<....<<<<...>>>>.
....>>>...<<<.<<<<<........>>>>>>>>....>>>>>>>>>..
.<<<.....>>>......>>>>>>........>..<.<.<......<<<<
<....>>>>><<<<<<<<<...<<<<<<<<<.....<<<...<<<<<<<.
...........>>>>>>>..>>.>.....>>>>.>>>>>..>>>>>>>.>
>..<<<<<<<<<<......>>>>>>>>>>....<<<......>>>....<
<<.<<<...<<<(((.....<<<<<<...........<<..<<<<.<<..
.......................>>.>>>>.>>...........)))...
..>>>>>>.>>>...>>>>>>..<...<....>...>......>.>.><.
<<<<<<<.<<......<<<<<.<<....>>.>>>>>...>>.>>>>>>>.
.>.....>>>.>><......<<....<<<<<<.......>>>>>><<<<.
...<<<<<.<<...<<<..<....<.....>...>.>>>....((<<<<<
<<.<.<<<...<<<....>>>...>>>..>>>>..<<<<<........>>
>>>))<<<<<<............<<<<.....<<<<..............
..........................<...<<.........>>...>...
...........<....>..................>>>>..........>
>>>...........>>>>>>>>>>..>>.....<<......>>>>>>>.<
<<.......>>>..>>>>..<<<<....<<<<<<<<.<<.........<.
....<<<<<....<<..>>.....>>>>><<<<<<<...<.......>..
>>>>>>>............<<<<<<<<<..<<<.........>>>..<<<
<<<<.....<<<....>>>.......>>>>>>>.<<<<<.<<<..<<<<<
<<..<<<...<......<<<...<....>...>.>>......>...>>>>
>>>>..>>>>>...........................<...........
<<<<<.......>>>>>.....>....>>>>>..>>.>>>>>>>..>..>
>.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<
<<<<<<.(((.[[......<<<<.[[<<<<..<<<<<.<<.<<<<<<.<<
<<.<<<<<.<<<<..>>>>.>>>>>.>>>>....<<.<<<<<<.....>>
>>>>>>.....>>>>>>.>>..>>>>>..<<<<.....>>>><<<<<<..
.........>>>>>>..<<...<<<<<<<..<<...............>>
.....<<.[.(((>>....>>>>>>>...<<<<..<<<......>>>..>
>>>.<<<....>>>.>>)))]......<<<<<<<.((..>>>>..))>>>
>>>>.............>>>>..]]>>>>.......<<<<...<<<<<<.
..<<.......>>...>>>>>>....>>>.>.......<<<<<.<<<<<<
..<<<<<<<<<......>>>>>>..>>>.<<<<<.....>>>>>.....>
>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....]]..)))
>>>>>>>>.....<<<<<....<<<<..<.....................
..>..<<<<<...<<<<...<<<<<<<<<<......>>>>>..>>>>>..
.>>>>.>>>>>...<<<....<<<<<...........>>>>>....>.>>
>>>>........>>>>>................<<<<<<<<.........
>>>>....<<<<<<<<.<<<....<<<<<....>>>>>...>>>..>>>>
>.>>>...>>>>....>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7asp Staphylococcus aureus 50S after 30 minutes incubation a 37C
Resolution2.86 Å
Binding residue
(original residue number in PDB)
G39 T68 K69 S73 F77 R78 L79 R80 E81 G82 M83 P84 I85 G86 V117 K119 K120 A121 D123 N127 Y128 T129 L130 G131 V132 K133 E134
Binding residue
(residue number reindexed from 1)
G21 T50 K51 S55 F59 R60 L61 R62 E63 G64 M65 P66 I67 G68 V99 K101 K102 A103 D105 N106 Y107 T108 L109 G110 V111 K112 E113
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7asp, PDBe:7asp, PDBj:7asp
PDBsum7asp
PubMed
UniProtA0A6G4QK55

[Back to BioLiP]