Structure of PDB 6v4k Chain F Binding Site BS01

Receptor Information
>6v4k Chain F (length=455) Species: 670 (Vibrio parahaemolyticus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KIIILGAGQVGGTLAENLVGENNDITIVDNNADRLRELQDKYDLRVVNGH
ASHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRVARIRS
PEYLAEKEALFKSGAIPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEQ
KVSLVAVKAYYGGPLVGNALSALREHMPHIDTRVAAIFRQGRPIRPQGTT
IIEADDEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRL
EQTYSVKLIERDYQRAEKLSEQLENTIVFCGDAADQELLTEENIDQVDVF
IALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISPQ
QATISALLTHVRRADIVNVSSLRRGAAEAIEAVAHGDETTSKVVGRAIGD
IKLPPGTTIGAVVRGEEVLIAHDRTVIEQDDHVVMFLVDKKYVPDVEALF
QPSPF
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain6v4k Chain F Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6v4k TrkA undergoes a tetramer-to-dimer conversion to open TrkH which enables changes in membrane potential.
Resolution3.53004 Å
Binding residue
(original residue number in PDB)		V238 G240 G241 N242 E261 R262 D283 A284 T305
Binding residue
(residue number reindexed from 1)		V237 G239 G240 N241 E260 R261 D282 A283 T304
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008324 monoatomic cation transmembrane transporter activity
GO:0015079 potassium ion transmembrane transporter activity
GO:0046872 metal ion binding
Biological Process
GO:0006813 potassium ion transport
GO:0071805 potassium ion transmembrane transport
Cellular Component
GO:0005886 plasma membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6v4k, PDBe:6v4k, PDBj:6v4k
PDBsum6v4k
PubMed31992706
UniProtQ87KD2

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