Structure of PDB 6odf Chain F Binding Site BS01

Receptor Information
>6odf Chain F (length=419) Species: 11021 (Eastern equine encephalitis virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LDTHFTQYKLARPYIADCPNCGHSRCDSPIAIEEVRGDAHAGVIRIQTSA
MFGLKTDGVDLAYMSFMNGKTQKSIKIDNLHVRTSAPCSLVSHHGYYILA
QCPPGDTVTVGFHDGPNRHTCTVAHKVEFRPVGREKYRHPPEHGVELPCN
RYTHKRADQGHYVEMHQPGLVADHSLLSIHSAKVKITVPSGAQVKYYCKC
PDVREGITSSDHTTTCTDVKQCRAYLIDNKKWVYNSGRLPRGEGDTFKGK
LHVPFVPVKAKCIATLAPEPLVEHKHRTLILHLHPDHPTLLTTRSLGSDA
NPTRQWIERPTTVNFTVTGEGLEYTWGNHPPKRVWAQESGEGNPHGWPHE
VVVYYYNRYPLTTIIGLCTCVAIIMVSCVTSVWLLCRTRNLCITPYKLAP
NAQVPILLALLCCIKPTRA
Ligand information
Ligand IDU9A
InChIInChI=1S/C5H11NO11S2/c7-2-1(6-18(10,11)12)4(9)16-5(3(2)8)17-19(13,14)15/h1-9H,(H,10,11,12)(H,13,14,15)/t1-,2-,3-,4-,5-/m1/s1
InChIKeySENPUEYGUGAZCY-WHDMSYDLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[C@H]1([C@H]([C@H]([C@H](O[C@H]1O)OS(=O)(=O)O)O)O)NS(=O)(=O)O
CACTVS 3.385O[CH]1O[CH](O[S](O)(=O)=O)[CH](O)[CH](O)[CH]1N[S](O)(=O)=O
CACTVS 3.385O[C@@H]1O[C@H](O[S](O)(=O)=O)[C@H](O)[C@H](O)[C@H]1N[S](O)(=O)=O
ACDLabs 12.01C1(C(C(NS(O)(=O)=O)C(OC1OS(O)(=O)=O)O)O)O
OpenEye OEToolkits 2.0.7C1(C(C(C(OC1O)OS(=O)(=O)O)O)O)NS(=O)(=O)O
FormulaC5 H11 N O11 S2
Name[(2R,3R,4R,5R,6R)-2,4,5-trihydroxy-6-(sulfooxy)tetrahydro-2H-pyran-3-yl]sulfamic acid
ChEMBL
DrugBank
ZINC
PDB chain6odf Chain K Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6odf Cryo-EM structure of eastern equine encephalitis virus in complex with heparan sulfate analogues.
Resolution5.8 Å
Binding residue
(original residue number in PDB)
H82 H114
Binding residue
(residue number reindexed from 1)
H81 H113
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.21.90: togavirin.
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:6odf, PDBe:6odf, PDBj:6odf
PDBsum6odf
PubMed32245806
UniProtQ4QXJ7|POLS_EEEVF Structural polyprotein

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