Structure of PDB 6lg0 Chain F Binding Site BS01

Receptor Information
>6lg0 Chain F (length=444) Species: 65409 (Scutellaria baicalensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NVGAHIALFPCAGMGHLLPFLRLAAMLDARGCAVTVITVKPTVSAAESDH
LSAFFTIHPRITRLEFQLLPYQKSGLRNDDPFFIQMETIATSVHLLRPLL
SSLSPPLSAIVSDFTLTSQVTDLVSDLPISTYTLMTSSAAFFCLMAYLPK
LLQIDVANRDAIEIPDLGPISMSSIPPKMLDPSDFFSAFISSNVSSLHKV
KGVLINTFNSFESEAIEAVRRNGVDHILPIGPLESYDKAHDLPWLDEQPP
ESVLFVSFGSRTALSKEQIRELGAALEKSGCRFLWVLKGGKVDKEDKEEV
EDMLGASFVERTKKKGLIVKGWVKQEQILAHPAIGGFVSHCGWNSVIEAA
RLGVPVLAWPQHGDQSVNAGVVEKAGLGLWVREWGWGQTKLIGREEIAEK
MIEVMQDEKLRVSAGEVRAKAKETREVDGDSEALLQRLIHSFNN
Ligand information
Ligand IDUDP
InChIInChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyXCCTYIAWTASOJW-XVFCMESISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
FormulaC9 H14 N2 O12 P2
NameURIDINE-5'-DIPHOSPHATE
ChEMBLCHEMBL130266
DrugBankDB03435
ZINCZINC000004490939
PDB chain6lg0 Chain F Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6lg0 Dissection of the general two-step di- C -glycosylation pathway for the biosynthesis of (iso)schaftosides in higher plants.
Resolution2.998 Å
Binding residue
(original residue number in PDB)		G23 L26 S270 W332 V333 Q335 H350 N354 S355 E358
Binding residue
(residue number reindexed from 1)		G15 L18 S260 W322 V323 Q325 H340 N344 S345 E348
Annotation score4
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 14:23:09 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6lg0', asym_id = 'F', bs = 'BS01', title = 'Dissection of the general two-step di- C -glycos...osynthesis of (iso)schaftosides in higher plants.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6lg0', asym_id='F', bs='BS01', title='Dissection of the general two-step di- C -glycos...osynthesis of (iso)schaftosides in higher plants.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008194,0035251', uniprot = '', pdbid = '6lg0', asym_id = 'F'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008194,0035251', uniprot='', pdbid='6lg0', asym_id='F')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>