Structure of PDB 6ep5 Chain F Binding Site BS01
Receptor Information
>6ep5 Chain F (length=203) Species:
1351
(Enterococcus faecalis) [
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HHHMLENKLGIINQLELNRVEERVSKENAKRLYDSGDIDRIEVGTFKGLS
YIHNYLFEDIYEFAGKVRSQNISKGNFRFAPVMYLEIALEHIDKMPQRNL
DEIVAKYVEMNIAHPFREGNGRATRIWLDLILKKELKRVVDWNLINKEDY
LSAMERSPVKDLEIKYLISNALTDKINDREIFMKGIDISYYYEGYTEYNV
DEL
Ligand information
Ligand ID
ADP
InChI
InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
XTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
Formula
C10 H15 N5 O10 P2
Name
ADENOSINE-5'-DIPHOSPHATE
ChEMBL
CHEMBL14830
DrugBank
DB16833
ZINC
ZINC000012360703
PDB chain
6ep5 Chain F Residue 301 [
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Receptor-Ligand Complex Structure
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PDB
6ep5
A Ca2+-regulated deAMPylation switch in human and bacterial FIC proteins.
Resolution
1.928 Å
Binding residue
(original residue number in PDB)
K78 F81 F83 N115 H118 G123 N124 G125 R126 M158 E159 E197
Binding residue
(residue number reindexed from 1)
K74 F77 F79 N111 H114 G119 N120 G121 R122 M154 E155 E193
Annotation score
4
External links
PDB
RCSB:6ep5
,
PDBe:6ep5
,
PDBj:6ep5
PDBsum
6ep5
PubMed
30850593
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