Structure of PDB 6duk Chain F Binding Site BS01

Receptor Information

>6duk Chain F (length=298) Species: 9606 (Homo sapiens)

QALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA
TSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLD
YVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQH
VKITDFGLAKLLGAVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG
SKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADSRPKF
RELIIEFSKMARDPQRYLVIQGDERMHLPSPTDSNFYRALMDEEDMDD

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 6duk Chain F Residue 1101

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6duk Single and Dual Targeting of Mutant EGFR with an Allosteric Inhibitor.
• Resolution: 2.2 Å
• Binding residue (original residue number in PDB): N842 D855
• Binding residue (residue number reindexed from 1): N142 D155
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): D837 A839 R841 N842 D855
• Catalytic site (residue number reindexed from 1): D137 A139 R141 N142 D155
• Enzyme Commision number: 2.7.10.1: receptor protein-tyrosine kinase.

Gene Ontology

Molecular Function

• GO:0004672 protein kinase activity
• GO:0004713 protein tyrosine kinase activity
• GO:0005524 ATP binding

Biological Process

• GO:0006468 protein phosphorylation

External links

• PDB: RCSB:6duk, PDBe:6duk, PDBj:6duk
• PDBsum: 6duk
• PubMed: 31092401
• UniProt: P00533|EGFR_HUMAN Epidermal growth factor receptor (Gene Name=EGFR)