Structure of PDB 6az3 Chain F Binding Site BS01

Receptor Information

>6az3 Chain F (length=137) Species: 5661 (Leishmania donovani)

SRKSPEYTTLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVVSGPM
KYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFVSDARAQLQKKID
AALIAAIKKDAQGKEKAGYLRSVFTVKPGDAPHRWNW

Ligand information

>6az3 Chain 1 (length=1620)

agaccugaguguggcaggacuacccgccgaacuuaagcauauuacucagc
ggaggaaaagaaaacaaccgugauucucucagugagcggcgagcgaagag
ggaacgaacucguugccgaaucgggucuuacaaggccuugaguuguggca
caaauaucauuucgugguuggugcaggaguggcgaaauucaagcgcaaag
caaacccguugcugaauacaacccuucaugugaguauugagccaaagaag
guguuagcccauugagccauaaaccugagcgccucaugaacaagcgagua
gcacuguuugggaaugcagugucaaguggcagguauuugucugccaaagu
uaaauacagaguaggaagaccgauagcgaacaaguagcgugagcgaaagu
uugaaaagcacuuuggaaagagagugaaauagaaccugaagucgugacaa
agacaauggaaguaccuccauuucaacggccagaaccagcccuacugcau
uauccugucgggggucaaaauccggcgggcaagaagugcaagaagggucu
uggugaaaugagcggaguauuugagcugugcacggcgcgcacgcacucuu
cuccgugaugcuccauguuggcgaugaaauggggugcccccacccgucuu
gaaacacggaccaaggagucaaacagacgcgcaagggaggagauaugguu
gccaguacuuucucguacugaaagggagaugcaaaaugcaucuguggugu
gcacacgucauuugcccaacaccgaccggcccuccguggguugcguugga
gugugccuguuuggacccgaaagguggugaacuaugccugaacaagguga
agcccggggaaacccagguggaggccuguagcgaugcugacgugcaaauc
gcucguaugauuuggguaucggagcgaaagacucaucgaaccaccuagua
gcugguucacaucgaaguuucccucaggauagcuggugcuaguagaagua
uugugcgguaaagcaaaugauuagaggcauugggaccuauucucaaacuu
uaaaugugcaaacaaaccggccuuagccaacugcaaggccggaaagaaaa
gaauuagaggcaccaagugggccuucuucgguaagcggagcaggcgaugc
ggaaugaaccgcuuagggauauguggcgucaaaacuuaugggcucauucu
cgauacguaaaggguguugguggauauccaccggccccgaaaauggauga
cgcuuaagcccaauuagugauugcccauuauuccuuugguaagggcggaa
acaaaggagaaaguguagcccuuccgauguagauguggccuggagguuag
gacgaagcuuauggcgugagccuaagauggaccggccucuagugcagauc
uugguuggcguagcaaagaucuaacggagauauacucaacaugcaacguu
ggauacuggagcggggaaggauuucgugccaacggcacucguacacgagu
uguucggaaacugagcacaacguuauaucguuuuguuaggaaagugaagg
uggucggccauaacugaaaaggggcaacagagaaccugggauuauauucc
aaaaagaaauugcauguggg

......................<<<<<......<<....>>.......>>
>>.>.........<<....>>..<<<<<<......<<.....>>....>>
>>>>...<<<...<<<<<..<<<<<<<......>>>>>.>>....>>>>>
..........<<<<<<...<<<<<<<<.<<<<<......<<<......<<
<<.......>>>>.....<<........>>......>>>.<<.......(
(.....>>)).....>>>>>...>>>..>>>>>.>>>>>>..........
<<<<<<<........>>>>>>>.....<<<<<........>>>>>..>>>
....................................<<....>>......
..........<<<......>>>............................
......(((..<<<<<<.<<<<<<..((.<<<<.<<<<<<<<<...<<<<
...<<<<<<<<<........>>>>>>>>>.....>.>>>....>>>>>..
>>>>........<<<<<.....<<...<<<<.<<...>>...>>>>>>..
>>>>>.....<<<<...>>>>))..>>>>>>>>>>>>..))).<<<<...
.....>>>><<<<<<...<<<<<<<<.<<<<<..<<<.<<<<.<......
......>>>>>>>>...<<....>>..<<<<<.....>>>>>...<<<<<
...<<.<...>.>>....>>>>><<<<<<<<<.....>>>>>>.>>>...
>>>>>.>>>>>>>>.<<.<..<<<<<<<.....<<<<<<<<<..<<<...
.<<<.<<<....>>>.>>>.....>>>...<<<<.<<.<<........>>
>>>>>>....>>>>>>>>>...<<.......>>......>>>>>>...>.
.>.>>...<<<<<....<.<<<....>>>.><<<<<<<<<.....<<...
<<<<<<<...<<<....<<<....<<<...<..>.>>>....>>>..>.>
>...>>>>>>>.....<<<<<<<<.<<.....>>>>>>>>>>........
...>>...>>>>>>>.>>..<<<<.<<<<<.....>>>>>.>>>>...<<
<<......>>>>..<<<<<<<...<<<(((......<..<<<<.......
.<.........<<<.<<<<<<<<<..>>>>>>>>>>>>..........))
).>....>>>>.>.........>>>...>>>>>>>((((.<<<<<.....
.....>>>>.........>>>>>))))....>>>>>....<<<<<<<<..
.......<<<..<<<....>>>.>>>.......>>>>>>>>........>
>>>>>..............<<<<<<<....................>>>>
>>>....................<<<<<....<<.....>>..>>>>>..
..<<..........<<.<<<<<......>>>>............<..<<.
<..........>.>>..>...>.>>..........<<<<.........>>
....>>.>>...........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6az3 Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.
• Resolution: 2.5 Å
• Binding residue (original residue number in PDB): T28 N60 R82 Y83
• Binding residue (residue number reindexed from 1): T9 N41 R63 Y64

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 19:59:48 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6az3', asym_id = 'F', bs = 'BS01', title = 'Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6az3', asym_id='F', bs='BS01', title='Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6az3', asym_id = 'F'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6az3', asym_id='F')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>