Structure of PDB 5yb4 Chain F Binding Site BS01

Receptor Information
>5yb4 Chain F (length=35) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIVQQQNNLLRAIKAQQHLLQRTVWGIKQLQARIL
Ligand information
>5yb4 Chain H (length=22) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
LTWEEWEKKIEEYTKKIEEILK
Receptor-Ligand Complex Structure
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PDB5yb4 Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
Resolution2.5 Å
Binding residue
(original residue number in PDB)
Q51 H53 L54 R57 W60
Binding residue
(residue number reindexed from 1)
Q16 H18 L19 R22 W25
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5yb4, PDBe:5yb4, PDBj:5yb4
PDBsum5yb4
PubMed29535974
UniProtP04578|ENV_HV1H2 Envelope glycoprotein gp160 (Gene Name=env)

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