Structure of PDB 5xhp Chain F Binding Site BS01

Receptor Information

>5xhp Chain F (length=303) Species: 909946 (Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74)

SGHVSFAGIDYPLLPLNHQTPLVFQWFERNPDRFGQNEIPIINTQKNPYL
NNIINAAIIEKERIIGIFVDGDFSKGQRKALGKLEQNYRNIKVIYNSDLN
YSMYDKKLTTIYLENITKLEAQSASERDEVLLNGVKKSLEDVLKNNPEET
LISSHNKDKGHLWFDFYRNLFLLKGSDAFLEAGKPGCHHLQPGGGCIYLD
ADMLLTDKLGTLYLPDGIAIHVSRKDNHVSLENGIIAVNRSEHPALIKGL
EIMHSKPYGDPYNDWLSKGLRHYFDGSHIQDYDAFCDFIEFKHENIIMNT
SSL

Ligand information

• Ligand ID: ARG
• InChI: InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1
• InChIKey: ODKSFYDXXFIFQN-BYPYZUCNSA-O
• SMILES:
  OpenEye OEToolkits 1.5.0: C(CC(C(=O)O)N)CNC(=[NH2+])N
  CACTVS 3.341: N[C@@H](CCCNC(N)=[NH2+])C(O)=O
  OpenEye OEToolkits 1.5.0: C(C[C@@H](C(=O)O)N)CNC(=[NH2+])N
  CACTVS 3.341: N[CH](CCCNC(N)=[NH2+])C(O)=O
  ACDLabs 10.04: O=C(O)C(N)CCCN\C(=[NH2+])N
• Formula: C6 H15 N4 O2
• Name: ARGININE
• PDB chain: 5xhp Chain F Residue 401

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5xhp Crystal structure of L-arginine and UDP bounded glycosyltransfease
• Resolution: 2.8 Å
• Binding residue (original residue number in PDB): D239 H260 E271 N272 G273 N338 S341
• Binding residue (residue number reindexed from 1): D200 H221 E232 N233 G234 N299 S302
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0000166 nucleotide binding
• GO:0046872 metal ion binding

External links

• PDB: RCSB:5xhp, PDBe:5xhp, PDBj:5xhp
• PDBsum: 5xhp
• UniProt: E8XCX6