Structure of PDB 5vvk Chain F Binding Site BS01

Receptor Information
>5vvk Chain F (length=94) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGL
AEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
Ligand information
>5vvk Chain J (length=43) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cactggtggtcgccgcggtttaggaacactctaagatattaga
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5vvk Structures of the CRISPR genome integration complex.
Resolution2.9 Å
Binding residue
(original residue number in PDB)		R77 R78
Binding residue
(residue number reindexed from 1)		R77 R78
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004519 endonuclease activity
GO:0005515 protein binding
Biological Process
GO:0043571 maintenance of CRISPR repeat elements
GO:0051607 defense response to virus
GO:0099048 CRISPR-cas system

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5vvk, PDBe:5vvk, PDBj:5vvk
PDBsum5vvk
PubMed28729350
UniProtP45956|CAS2_ECOLI CRISPR-associated endoribonuclease Cas2 (Gene Name=ygbF)

[Back to BioLiP]