Structure of PDB 5ljv Chain F Binding Site BS01

Receptor Information
>5ljv Chain F (length=325) Species: 342108 (Paramagnetospirillum magneticum AMB-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NRLFLGVDLGTSHTAVMSSRGKKFLLKSVVGYPKDVIGLKLLGRPYVVGD
EAFEMRSYLDIRYPLQDGVLSEISDRDIEVARHLLTHVVKSAEPGPNDEI
CAVIGVPARASAANKALLLKMAQEVVHTALVVSEPFMVGYGLDKLINTII
VDIGAGTTDICALKGTVPGPEDQVTLTKAGNYVDERLQNAILERHPELQM
NVNVACAVKEQFSFVGTPTEVASFEFRAAGKPVRADVTEPVKIACEALMP
DIIESIETLLRSFQPEYQATVLQNIVFAGGGSRIRGLAAYVKEKLRPFGD
ANVTCVKDPTFDGCRGALRLAEELP
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain5ljv Chain F Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5ljv X-ray and cryo-EM structures of monomeric and filamentous actin-like protein MamK reveal changes associated with polymerization.
Resolution3.64 Å
Binding residue
(original residue number in PDB)		G19 T20 S21 H22 G163 A164 G189 K218 E219 S222 G289 R292
Binding residue
(residue number reindexed from 1)		G10 T11 S12 H13 G154 A155 G180 K209 E210 S213 G280 R283
Annotation score5
Enzymatic activity
Enzyme Commision number 3.6.1.-
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0005525 GTP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
GO:0046872 metal ion binding
Biological Process
GO:0140923 magnetosome assembly
Cellular Component
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0016020 membrane
GO:0110143 magnetosome
GO:0110146 magnetosome membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5ljv, PDBe:5ljv, PDBj:5ljv
PDBsum5ljv
PubMed27821762
UniProtQ2W8Q6|MAMK_PARM1 Actin-like protein MamK (Gene Name=mamK)

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