Structure of PDB 5kd7 Chain F Binding Site BS01
Receptor Information
>5kd7 Chain F (length=275) Species:
10090
(Mus musculus) [
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SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARW
IEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGC
DVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAG
AAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTL
RCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPL
GKEQKYTCHVEHEGLPEPLTLRWGK
Ligand information
>5kd7 Chain H (length=9) Species:
11696
(HIV-1 M:B_MN) [
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IGPGRAFYV
Receptor-Ligand Complex Structure
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PDB
5kd7
Effects of Cross-Presentation, Antigen Processing, and Peptide Binding in HIV Evasion of T Cell Immunity.
Resolution
2.35 Å
Binding residue
(original residue number in PDB)
Y7 R62 E63 R66 N70 S73 F74 D77 Y84 W97 W114 T143 W147 A150 A152 R155 Y159 W167 Y171
Binding residue
(residue number reindexed from 1)
Y6 R61 E62 R65 N69 S72 F73 D76 Y83 W96 W113 T142 W146 A149 A151 R154 Y158 W166 Y170
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:5kd7
,
PDBe:5kd7
,
PDBj:5kd7
PDBsum
5kd7
PubMed
29374075
UniProt
P01900
|HA12_MOUSE H-2 class I histocompatibility antigen, D-D alpha chain (Gene Name=H2-D1)
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