Structure of PDB 5hnm Chain F Binding Site BS01

Receptor Information
>5hnm Chain F (length=180) Species: 226185 (Enterococcus faecalis V583) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QEWSLILVNRQNPIPAQYDVELEQLSNGERIDIRISPYLQDLFDAARADG
VYPIVASGYRTTEKQQEIMDEKVAEYKAKGYTSAQAKAAAETWVAVPGTS
EHQLGLAVDINADGIHSTGNEVYRWLDENSYRFGFIRRYPPDKTEITGVS
NEPWHYRYVGIEAATKIYHQGLCLEEYLNT
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5hnm Chain F Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5hnm To be published
Resolution2.3 Å
Binding residue
(original residue number in PDB)
H188 D195 H241
Binding residue
(residue number reindexed from 1)
H102 D109 H155
Annotation score4
Enzymatic activity
Enzyme Commision number 3.4.17.-
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5hnm, PDBe:5hnm, PDBj:5hnm
PDBsum5hnm
PubMed
UniProtQ47746|VANY_ENTFA D-alanyl-D-alanine carboxypeptidase (Gene Name=vanYB)

[Back to BioLiP]