Structure of PDB 3fi0 Chain F Binding Site BS01

Receptor Information
>3fi0 Chain F (length=296) Species: 1422 (Geobacillus stearothermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKTIFSGIQIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQ
NIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMT
QVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRFT
IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSS
EGTIRYGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETL
RPIQERYHHWMESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR
Ligand information
Ligand IDTRP
InChIInChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1
InChIKeyQIVBCDIJIAJPQS-VIFPVBQESA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)C(N)Cc2c1ccccc1nc2
OpenEye OEToolkits 1.5.0c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)N
OpenEye OEToolkits 1.5.0c1ccc2c(c1)c(c[nH]2)CC(C(=O)O)N
CACTVS 3.341N[CH](Cc1c[nH]c2ccccc12)C(O)=O
CACTVS 3.341N[C@@H](Cc1c[nH]c2ccccc12)C(O)=O
FormulaC11 H12 N2 O2
NameTRYPTOPHAN
ChEMBLCHEMBL54976
DrugBankDB00150
ZINCZINC000000083315
PDB chain3fi0 Chain F Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3fi0 Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		F5 G7 H43 M129 D132 I133 V141
Binding residue
(residue number reindexed from 1)		F5 G7 H37 M113 D116 I117 V125
Annotation score5
Enzymatic activity
Catalytic site (original residue number in PDB) K192 K195
Catalytic site (residue number reindexed from 1) K172 K175
Enzyme Commision number 6.1.1.2: tryptophan--tRNA ligase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0004830 tryptophan-tRNA ligase activity
GO:0005524 ATP binding
Biological Process
GO:0006412 translation
GO:0006418 tRNA aminoacylation for protein translation
GO:0006436 tryptophanyl-tRNA aminoacylation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3fi0, PDBe:3fi0, PDBj:3fi0
PDBsum3fi0
PubMed19174517
UniProtP00953|SYW_GEOSE Tryptophan--tRNA ligase (Gene Name=trpS)

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