Structure of PDB 2d5h Chain F Binding Site BS01

Receptor Information
>2d5h Chain F (length=377) Species: 3847 (Glycine max) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FNECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRN
GLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEQLQDSHQKIRHFNEG
DVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPD
IEHPETMQQEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTV
EGGLSVISNICTMKLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFG
LSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGEL
RRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIKDVFRAIPSEV
LSNSYNLGQSQVRQLKYQGNSGPLVNP
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain2d5h Chain F Residue 606 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2d5h Conservation and divergence on plant seed 11S globulins based on crystal structures.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		H383 Y441
Binding residue
(residue number reindexed from 1)		H267 Y325
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0045735 nutrient reservoir activity

View graph for
Molecular Function
External links
PDB RCSB:2d5h, PDBe:2d5h, PDBj:2d5h
PDBsum2d5h
PubMed20215054
UniProtP04347|GLYG5_SOYBN Glycinin G5 (Gene Name=GY5)

[Back to BioLiP]