Structure of PDB 4v4g Chain EM Binding Site BS01

Receptor Information
>4v4g Chain EM (length=125) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEA
EVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQ
RTRTNARTRKGPRKTVAGKKKAPRK
Ligand information
>4v4g Chain EA (length=1526) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac
augcaagucgugcggauacgcgcggccccuuggggccgugcgucagcggc
ggacgggugaguaacgcgugggugaccuacccggaagagggggacaaccc
ggggaaacucgggcuaaucccccauguggacgcaaguccaaagggggaag
ccuucgggucccccgcuuccggaugggcccgcgucccaucagcuaguugg
ugggguaauggcccaccaaggcgacgacggguagccggucugagaggaug
gccggccacaggggcacugagacacgggccccacuccuacgggaggcagc
aguuaggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuu
ggaggaagaagcccuucgggguguaaacuccugaacccgggacgaaacca
gggccacucauacuggcucugacugacgguaccgggguaauagcgccggc
caacuccgugccagcagccgcgguaauacggagggcgcgagcguuacccg
gauucacugggcguaaagggcguguaggcggccuggggcgucccauguga
aagaccacggcucaaccgugggggagcgugggauacgcucaggcuagacg
gugggagagggugguggaauucccggaguagcggugaaaugcgcagauac
cgggaggaacgccgauggcgaaggcagccaccugguccacccgugacgcu
gaggcgcgaaagcguggggagcaaaccggauuagauacccggguagucca
cgcccuaaacgaugcgcgcuaggucucuggcggcucaaccgcugggggcc
gaagcuaacgcguuaagcgcgccgccuggggaguacggccgcaaggcuga
aacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccaggccuugacaugcuagggaac
ccgggugaaagccuggggugccuucgggagcccuagcacaggugcugcau
ggccgucgucagcucgugccgugagguguuggguuaagucccgcaacgag
cgcaacccccgccguuaguugccagcgguucggccgggcacucuaacggg
acugcccgcgaaagcgggaggaaggaggggacgacgucuggucagcaugg
cccuuacggccugggcgacacacgugcuacaaugcccacuacaaagcgau
gccacccggcaacggggagcuaaucgcaaaaaggugggcccaguucggau
uggggucugcaacccgaccccaugaagccggaaucgcuaguaaucgcgga
ucagccaugccgcggugaauacguucccgggccuuguacacaccgcccgu
cacgccaugggagcgggcucuacccgaagucgccggguaaccuacgggaa
gaggcgccgaggguagggcccgugacuggggcgaagucguaacaagguag
cuguaccggaaggugcggcuggauca
....<<<<....{[[..>>>>.<<<<.<<<<<..<<<<<<<......<<<
.<<<..<<<..<<.....<<<<..<<<<....>>>>..>>>>...>>>>>
......<<.......<<<<<<<<..<<...<<...<<....<<....<<<
..........>>>.....>>........<<<....>>>......<<<<..
........>>>.>..>>...>>..>>>>>>>>>><<<....<<<....<<
<<..........>.>>>..>>>......>>>...<<.<<<<....>>>>.
...>>..>>.<<<<<............>>>>>...<<....>>.....>>
>>>>.........<<<....<<<<....>>>>..>>>...>.>>>>>>..
<<<<......<<<......>>>.....>>>>..<<<<<<<.........<
<<<<<<.......>>>>>>>...........>>>>>.>..>.<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<.(......<<<<...<<<.<<<<<<<.<<<<.<<<<...
......<<<<.....>>>>.......>>>>.>>>..>>>>>>>>...<<<
<<<<<...<<<<<<<....<<<<<<<....<<<......>>>.......>
>>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>
...>>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<.....>>>>>>>>>>>>
...<<...)>>.....>>>>>>..>>.<<<......<<<<....>>>>..
..>>>...]].}...<<<.<<<<<<<.<<..<<<<...<<<<<<<<<<..
....<<........>>..........<<<<<<.......<<<<<.<<...
<.<<<<....>>>>.>..............>>.>>>>>.<<..<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<.....<...<<<.....>>>>.......>>>>>.
....<<<<<....>>>>>........>>>>.........>>>...>>>>>
>.>>....>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..
<<..<<<<....>>>>..>>....>>>.....>>>>>>>......<....
<<<<<<<........>>>>>>>....>......>>>>.....<<<<<<<.
.........>>>>>>>......>>...>>>>>>>>>>..........<<.
..<<<<.<<<..<<<<<<<<<.<<....<.<<<<................
..>>>>.>...>>.>>>>>>>>>..>>>.>>>>....>>.........<<
<<.<<<<....>>>>.>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v4g Structural basis for the control of translation initiation during stress.
Resolution11.5 Å
Binding residue
(original residue number in PDB)		K13 R14 Y21 Y23 G24 I25 G26 K27 A28 R29 Y87 R88 R91 R99 Q101 R102 T103 R104 T105 R108 K111 P124 R125 K126
Binding residue
(residue number reindexed from 1)		K12 R13 Y20 Y22 G23 I24 G25 K26 A27 R28 Y86 R87 R90 R98 Q100 R101 T102 R103 T104 R107 K110 P123 R124 K125
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 16:01:01 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v4g', asym_id = 'EM', bs = 'BS01', title = 'Structural basis for the control of translation initiation during stress.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v4g', asym_id='EM', bs='BS01', title='Structural basis for the control of translation initiation during stress.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003676,0003723,0003735,0005840,0006412', uniprot = '', pdbid = '4v4g', asym_id = 'EM'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0003723,0003735,0005840,0006412', uniprot='', pdbid='4v4g', asym_id='EM')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>