Structure of PDB 8rdw Chain E9 Binding Site BS01 |
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| >8rdw Chain Z2 (length=2729)
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gucaaguaaugaagcgcacaugguggaugccuuggcagucagaggcgaug
aaagacgugacagccugcgauaagcuucggggaggcggcaauauccugug
auccggagauuucugaauggggaaacccacuuaccauaagguagguaucu
uguacaagaagcgaacgaggggaagugaaacaucucaguacccuuaggaa
aagacaucaaaugagauuccccaaguagcggcgagcgaacggggagaagc
cgauuaaugcuaauguagaagaacagcgugggaaagcugaccguaguagg
ugauaguccuguauucgaaacauuagcguuaacauauuaaguagggcggg
acacgagaaauccugucugaagauggggggaccauccuccaaggcuaaau
acuccugacugaccgauagugaaccaguaccgugagggaaaggcgaaaag
aaccccugugaggggagugaaauagaaccugaaaccgugugcguacaagc
aguaggagccucaauuuauuggggugacugcguaccuuuuguauaauggg
ucagcgacuuauauucuguagcaagguuaaccguuuaggggagccguagg
gaaaccgagucuuaauagggcgucuaguugcaggguauagacccgaaacc
gagugaucuauccaugagcagguugaaagugccguaacaggcaccggagg
accgaacccacugucguugaaaagccaggggaugacuuguggauaggggu
gaaaggcuaaucaaacucggugauagcugguucuccccgaaagcuauuua
gguagcgccucggacgaauaccauuggggguagagcacuguuucggcuag
ggggucauaccgacuaaccgaugcaaacuccgaauaccgaugaguaauau
ccgggagacacacggcgggugcuaacguccgucguggagagggaaacaac
ccagaccgccagcuaaggccccaaauuccuaguuaagugggaaacgaggu
gggaaggcauagacagcuaggagguuggcuuagaagcagccauccuuuaa
agaaagcguaauagcucacuagucgagucggccugcgcggaagauguaac
ggggcucaaacuaggagccgaagcugcggauuugaaacuuguuuucaagu
gguaggggagcguuguguaagccugugaaggugugucguaaggcaugcug
gagguaucacaagagcgaaugcugacgugaguaacgauaaugcgagugaa
aagcucgcacgccggaagaucaaggguuccaguccaacguuaaucggggc
ugggugagucgaccccuaaggcgaggccgaaaggcguagucgaugggaaa
uugguuaauauuccaauacuuguuuauagugcgauggagggacggagaag
guuaugucagccuggcguugguuguccaggugaaaggauguaggcuuaca
guuuaggcaaauccggacuguaggcugagaucugauagcaaggaaguggc
aaauaccaugcuuccaggaaaagcuucuaaggcuauaaacgaaucguacc
cuaaaccgacacaggugaucagguagagaauaccaaggcgcuugagagaa
cucugcugaaggaacuaggcaaaaugguaccguaacuucgggagaaggua
cgcuguugauggugauaggucuccuugagcuuucgacagucgcagauacc
aggcugcugcaacuguuuauuaaaaacacagcacucugcaaacacgaaag
uggacguauagggugugaugccugcccggugcuggaagguuaauugaugg
gguuagcguaagcgaagcucuugaucgaagccccaguaaacggcggccgu
aacuauaacgguccuaagguagcgaaauuccuugucagguaaguucugac
cugcacgaauggcauaaugauggcagcgcugucuccagcagagacucagu
gaaaucgaaaucgcagugaagaugcuguguacccgcggcuagacggaaag
accccgugaaccuuuacuacagcuuuacauugaacuuggguucuaacuca
gguauaacaauaccgaggacaauguaugguggguaguuugacuggggcgg
ucuccuccuaaagaguaacggaggaguacgaaggugcgcucagaacgguc
ggaaaucguucauagaguauaaaggcaaaagcgcgcuuaacugcgagacc
cacaagucgagcagguacgaaaguaggucuuagugauccggugguucugu
auggaagggccaucgcucaacggauaaaagguacucuggggauaacaggc
ugauaccgcccaagaguucauaucgacggcgguguuuggcaccucgaugu
cggcucaucucauccuagggcugaagcagguccuaaggguauggcuguuc
gccauuuaaagagguacgcgagcuggguuuagaacgucgugagacaguuc
ggucccuaucuaccgugggcguuggaaauuugagaggaucugcuccuagu
acgagaggaccagaguggacgaaccucugguguucggguugucacgccag
uggcauugcccgguagcuacguucggaugggauaaccgcugaaagcaucu
aagcgggaagcccaccucaagauuagauuucccuaaagagccguugaaga
cuacgacguugauaggcaggguguggaagugcagcgaugcauguagcuaa
ccuguacuaauugcucguuuggcuugacc |
<<<<<<<......<<<<<<<<<<<.....<<.<<<<<<<<<<<<<<....
..<<<<<<.[..(((.>>>.....<<<<<<<..<<.)))..]..>>....
.>>>>>>>...>>>....<<<....>>><<<<<<<....>>>>>>>.<<<
<<..>>>>>.>>...<<<<<<.....<<....>>......>>>>>.>...
......<<....>>..<<<<<<.....<<.....>>....>>>>>>..<<
<..<<<<<<<<<<<<<.<<<...<<<<........>>>>((......<<<
.....))>>>...>>>...>>>>>>>>>>>>>...........<<<<<<<
<.........>>>>>>>>......<<<<<..((((>>>>>..>>>.....
.>>.>>>>>>>.>>>..............<<....>>....>>.......
..<<<<.....>>>>..................>>>>>>>>>>>......
.<<<<..<<<<<<<....>>>>>>>..>>>>...<.<........>.>.<
<<<<<....<<<<<<<<<<<<<..<<<...<<.....>>...>>>...<<
....>>..<<<<.....>>>>.....>>>>>>>>>>>>>..<<.<..<<<
<<<<.....<<<<<<<<<..<<<<....<<<<<......>>>>>..>...
>>>...<<<.<<<.<........>.>>>>>>....>>>>>>>>>...<<<
.....>>>......>>>>>>...>..>.>>..<<<<<<....<<<<<...
.>>>>>.<<<<<<<....<<<<<<<<<.....<<<...<<<.<<<<....
.<<..........>>..>>>>.>>>..>>.>.....>>>>>>.>>>...>
>>>>>.>...<<<<<<<<<<......>>>>>>>>>>....<<<......>
>>...<<<<.<<<...<<<(((.....<<<<<<...........<<..<<
<<<..<<........<<<<<.<<<..<<<<.......>>>>..>>>....
....<<<......>>>..>>>>>....>>..>>>>>.>>...........
)))......>>>>>>.>>>...>>>>>>><<<<<<.<.....>.>>>>>>
....>>>>>>..<<<<<...<<<......<<<<<<<<....>>>>>>>>.
..>>>..>>>>>........>>>>>><......<<.....<<<<<<....
...>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>
>>>....((<<<.<<<...<<<...<<<....>>>...>>>...>>>..<
<<<<........>>>>>))<<<<<<<<<<<.<...<<<<....<<<<..<
<<..<<<<<<<<<<<...[[[[...>>>>>>....<<<<...<<<<<<<<
<<<..<<.....>>.>>>>>>>>>>>...>>>>.............>>>>
>...>>>...>>>>.........>>>>...>>>>>>>>>>>>.>>>..>>
.....<<......>>>>>>>.<<<<.....>>>>..>>>>..<<<<....
<<<<<<<<.<<...............<<<<<...............>>>>
><<<<<<<<.<<<...<<<...>>>...>>>.>>>>>>>>..........
..<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<....>
>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<....<...<<
<<<<.<<....>>..>>>>>>..>.....>>>>>>>>..>>>>><<<<<<
.......>>>>>>........<...........<<<<<<.....>>>>>>
.....>....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.>>>>>>
.....>.....<<<<<........>>>>>..<<<<<<<.<<<<.<<....
..<<<<.<<<<<<..<<<<<.<<<.<<<<<.<<<<<..>>>>>...<<<.
<<<<<....>>>>>>>>....>>>>>.>>>..>>>>>..<<<<.....>>
>><<<<<<...........>>>>>>..<<...<<<<<<<...<<<<<<..
.....>>>>>>.....<<.[.(((>>....>>>>>>>...<<<<..<<<.
.....>>>..>>>>.<<<....>>>.>>)))]......<<<<<<<.<<..
))))..>>>>>>>>>.............>>>>..>>>>>>.......<<<
<...<<<<<<...<<.......>>...>>>>>>....>>>.>.......<
<<<<.<<<<<<..<<<<<<<<<......>>>>>>..>>>.<<<<<.....
>>>>>.....>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>
....>>..>>>>>>>>>>>....<<<<<<<...<<<<..<<<<<<.....
............>>>>>>.<<<<<...<<<<...<<<<<<<<<<<]]]]>
>>>>>..>>>>>...>>>>.>>>>>...<<<....<<<<<..........
.>>>>>....>>>.>>>>.......>>>>>>>.....<<<<<<<<<....
...>>>>>....<<<<<<<<..<<....<<<<<....>>>>>...>>...
>>>>>.>>>...>>>>.....>>>>>>>. |
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| PDB | 8rdw A new family of bacterial ribosome hibernation factors |
| Resolution | 2.74 Å |
Binding residue
(original residue number in PDB) | R20 N23 H28 Q29 T32 Y34 L35 G37 G38 R39 Q40 T42 R43 A44 Q45 K46 R48 A49 V51 S52 G53 I56 K57 Q61 K62 G63 G65 R66 A67 R68 A69 G70 R73 S74 P75 I76 W77 R78 G79 R82 F84 P88 Q89 W91 Q93 K94 N96 R97 K98 M99 Y100 R101 P128 K129 T130 K131 I134 L158 R161 N162 P164 H165 |
Binding residue
(residue number reindexed from 1) | R20 N23 H28 Q29 T32 Y34 L35 G37 G38 R39 Q40 T42 R43 A44 Q45 K46 R48 A49 V51 S52 G53 I56 K57 Q61 K62 G63 G65 R66 A67 R68 A69 G70 R73 S74 P75 I76 W77 R78 G79 R82 F84 P88 Q89 W91 Q93 K94 N96 R97 K98 M99 Y100 R101 P128 K129 T130 K131 I134 L158 R161 N162 P164 H165 |
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| Enzyme Commision number |
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