Structure of PDB 8ckb Chain E489 Binding Site BS01

Receptor Information
>8ckb Chain E489 (length=503) Species: 2301731 (Bacteroides phage crAss001) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AGKLGKFQMLGFQHWKGLTSDNHLGAIFQQAPQKATNLMVQLLAFYRGKS
LDTFLNSFPTREFEDDNEYYWDVIGSSRRNIPLVEARDENGVVVAANAAN
VGVGTSPFYLVFPEDWFADGEVIVGNLNQVYPFRILGDARMEGTNAVYKV
ELMGGNTQGVPAERLQQGERFSIEFAPVEKELSRKVGDVRFTSPVSMRNE
WTTIRIQHKVAGNKLNKKLAMGIPMVRNLESGKQVKDTANMWMHYVDWEV
ELQFDEYKNNAMAWGTSNRNLNGEYMNFGKSGNAIKTGAGIFEQTEVANT
MYYNTFSLKLLEDALYELSASKLAMDDRLFVIKTGERGAIQFHKEVLKTV
SGWTTFVLDNNSTRVVEKVQSRLHSNALSAGFQFVEYKAPNGVRVRLDVD
PFYDDPVRNKILHPMGGVAFSYRYDIWYIGTMDQPNIFKCKIKGDNEYRG
YQWGIRNPFTGQKGNPYMSFDEDSAVIHRMATLGVCVLDPTRTMSLIPAI
LQG
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8ckb Chain E489 Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8ckb Structural atlas of the most abundant human gut virus
Resolution4.39 Å
Binding residue
(original residue number in PDB)		T296 A299 P491 T494
Binding residue
(residue number reindexed from 1)		T295 A298 P490 T493
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8ckb, PDBe:8ckb, PDBj:8ckb
PDBsum8ckb
PubMed
UniProtA0A385DVU6|CAPSD_BPCA1 Major capsid protein (Gene Name=crAss001_32)

[Back to BioLiP]