Structure of PDB 8xmd Chain E Binding Site BS01

Receptor Information

>8xmd Chain E (length=198) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKRED
LVTLKAKRNDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQ
QNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKK
TLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPRYVTYRYVV

Ligand information

>8xmd Chain N (length=17) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

ttgtgcttatcggtaga

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8xmd Transcription of the Plant RNA polymerase IV is prone to backtracking
Resolution	3.4 Å
Binding residue (original residue number in PDB)	G78 V79
Binding residue (residue number reindexed from 1)	G76 V77

Gene Ontology

	Cellular Component
GO:0000418	RNA polymerase IV complex
GO:0000428	DNA-directed RNA polymerase complex
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005665	RNA polymerase II, core complex

View graph for
Cellular Component

External links

PDB	RCSB:8xmd, PDBe:8xmd, PDBj:8xmd
PDBsum	8xmd
PubMed
UniProt	O81098\|RPB5A_ARATH DNA-directed RNA polymerases II and IV subunit 5A (Gene Name=NRPB5A)

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