Structure of PDB 8uhi Chain E Binding Site BS01

Receptor Information
>8uhi Chain E (length=465) Species: 91464 (Synechococcus sp. PCC 7335) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAGYDAGVQDYRLTYYAPDYTPRDTDILAAFRMTPQPGVPPEECAAAVAA
ESSTGTWTTVWTDLLTDMDRYRGRCYDIEPVPGEDNQYIAYVAYPLDLFE
EGSVTNLLTSLVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVER
DRINKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQ
PFQRWRDRFLFVADAIHKSQAETGEIKGHYLNVTAATCEEMMKRAAYAKE
LEMPIVMHDFLTGGFTANTTLAHWCRDNGILLHIHRAMHAVIDRQKNHGI
HFRVLAKCLRMSGGDHIHTGTVVGKLEGDRAGTLGFVDLLRENYIEQDKS
RGVYFTQDWASMPGVMAVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGH
PWGNAPGATANRVALEACVQARNEGRNLAREGGDIIREACKWSPELAAAC
ELWKEIKFEFDTVDT
Ligand information
Ligand IDRUB
InChIInChI=1S/C5H12O11P2/c6-3(1-15-17(9,10)11)5(8)4(7)2-16-18(12,13)14/h3,5-6,8H,1-2H2,(H2,9,10,11)(H2,12,13,14)/t3-,5-/m1/s1
InChIKeyYAHZABJORDUQGO-NQXXGFSBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C([C@H]([C@H](C(=O)COP(=O)(O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[CH](CO[P](O)(O)=O)[CH](O)C(=O)CO[P](O)(O)=O
ACDLabs 10.04O=P(O)(O)OCC(O)C(O)C(=O)COP(=O)(O)O
OpenEye OEToolkits 1.5.0C(C(C(C(=O)COP(=O)(O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[C@H](CO[P](O)(O)=O)[C@@H](O)C(=O)CO[P](O)(O)=O
FormulaC5 H12 O11 P2
NameRIBULOSE-1,5-DIPHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain8uhi Chain E Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uhi Structure of the antenna complex expressed during far-red light photoacclimation in Synechococcus sp. PCC 7335.
Resolution2.35 Å
Binding residue
(original residue number in PDB)		K176 K202 H295 R296 K335 L336 S380 G381 G404 G405
Binding residue
(residue number reindexed from 1)		K166 K192 H285 R286 K325 L326 S370 G371 G394 G395
Annotation score5
Enzymatic activity
Enzyme Commision number 4.1.1.39: ribulose-bisphosphate carboxylase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004497 monooxygenase activity
GO:0016829 lyase activity
GO:0016984 ribulose-bisphosphate carboxylase activity
GO:0046872 metal ion binding
Biological Process
GO:0009853 photorespiration
GO:0015977 carbon fixation
GO:0019253 reductive pentose-phosphate cycle
Cellular Component
GO:0031470 carboxysome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8uhi, PDBe:8uhi, PDBj:8uhi
PDBsum8uhi
PubMed38141759
UniProtB4WP00

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