Structure of PDB 8r6f Chain E Binding Site BS01 |
|
|
| >8r6f Chain A (length=1177)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
uaccugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugugcaaguaugaaccaaugaacugugaaacugcgaauggcucau
uaaaucaguuauaguuuguuugaugguauacucggauaaccguaguaauu
cuagagcuaauacgugcaacaaaccccgacuucugggaggggcgcauuua
uuagaugaugauucaugauaacucgacggaucgcacggccgccggcgacg
caucauucaaauuucugcccuaucaacuuucgaugguaggauaggggccu
accaugguggugacgggugacggagaauuaggguucgauuccggagaggg
agccugagaaacggcuaccacauccaaggaaggcagcaggcgcgcaaauu
acccaauccugacacggggagguagugacaauaaauaacaauaccggggu
cugguaauuggaaugaguacaaucuaaaucccuuaacgaggauccauugg
agggcaagucuggugccagcagccgcgguaauuccagcuccaauagcgua
uauuuaaguuguugcaguuaaaaagcucguaguuggaccuugggccgcga
ccccguuacuuugaagaaauuagagugcucaaagcaagccaucgcucugg
auacauuagcaugggauaacaucauaggauuccgguccuagggaucggag
uaaugauuaauagggacagucgggggcauucguauuucauagucagaggu
gaaauucuuggauuuaugaaagacgaacaacugcgaaagcauuugccaag
gauguuuucauuaaucaagaacgaaaguugggggcucgaagacgaucaga
uaccguccuagucucaaccauaaacgaugccgaccagggaucggcggaug
uugcuuaggacuccgccggcaccuuaugagaaaucaaagucuuuggguuc
cggggggaguauggucgcaaggcugaaacuuaaaggaauugacggaagug
guggagcgauuuguccuuuguacacaccgcccgucgcuccuaccgauuga
augguccggugaaguguucggaucgcggcgacggccgacgucgcgagaag
uccauugaaccuuaucauuuagaggaaggagaagucguaacaagguuucc
guaggugaaccugcggaaggaucauug |
...<<<<<.[.((((>>>>>.<<<.<<<<<<...<.<...<......<<<
.<<<..<<....<<....<<.........>>...>>.>>......<<...
.....<<<..<<..<<....<<<<<.......<<.....<..<<<.....
>>>..>......>>.........<<<<..<<...>>..>>>>.....<<<
<<<............>>>>>>.........<<<<..<<<.>>>.>>>>..
>>>>>...>>>>..>>>.<<<....<<<....<<<<<<<<.......>>>
>>>>>>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.
<<<..........>>>.>>.<.<<....>>.>...>>>>>>.........
<<<....<<<.....>>>..>>>..>....>.>.....<<<<<<<<.<.>
.>>>>>.>>>......<<..<...........>..>>.........<<<<
<((......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>
>>>>..........<.<((.....<.<<...<<<.<.....<<<.<..>.
>>>.<<<<<<.<<.......<<...<.......>..<<<....>>>....
.>>......>>.>>..>>>>.........<<<<<<<<<<.>>>>>>>>>>
.......>....<<<<<<.<<...<<<<..<<..<<<<<<<<...<<<..
....>>>......>>>>>>>>..>>.......<<....>>...>>>>...
>>>>>.>>>...>>>...>>.>....<<<<<<<...<...<<<<.<....
.>.>>>>...>>>>>>>>..........<<<.<<.<<<..<<<<<<<<.<
<<.<<.>>>>>>>>>>>>>..>>>...<<..))>>...>>.....>>>.>
.>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<..
..<<<....>>>...>>>>>>.>>....<..<<.<.<<<<<.<<.....<
<<<<<..<<<..<<<<..<...<<<<<<...<<..>>...>>>>>>...>
..>>>>..>>>..>>>>>>....>>.>>>>>..>.>>...>.....<<<<
<<<<<....>>>>>>>>>......... |
|
| Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
| PDB | 8r6f High-Resolution Structure and Internal Mobility of a Plant 40S Ribosomal Subunit. |
| Resolution | 2.34 Å |
Binding residue
(original residue number in PDB) | A2 R3 G4 L5 K6 K7 H8 K10 L12 N13 M19 D21 K22 L23 F27 A28 P29 K30 S33 G34 P35 K37 A38 R49 T57 Y58 R59 Q62 S63 M66 K75 R77 K106 R108 R110 R127 V129 F131 G132 Q133 K134 G135 Y138 N140 G144 R145 T146 R148 K155 G186 R187 E199 H201 K202 G203 F205 A219 K240 I248 R255 |
Binding residue
(residue number reindexed from 1) | A1 R2 G3 L4 K5 K6 H7 K9 L11 N12 M18 D20 K21 L22 F26 A27 P28 K29 S32 G33 P34 K36 A37 R48 T56 Y57 R58 Q61 S62 M65 K74 R76 K105 R107 R109 R126 V128 F130 G131 Q132 K133 G134 Y137 N139 G143 R144 T145 R147 K154 G185 R186 E198 H200 K201 G202 F204 A218 K239 I247 R254 |
|
|
| Enzyme Commision number |
? |
|
|
|
|
|
