Structure of PDB 8qch Chain E Binding Site BS01

Receptor Information
>8qch Chain E (length=344) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TDFYSELPKVELHAHLNGSISSHTMKKLIAQKPDLKIHDQMTVIDKGKKR
TLEECFQMFQTIHQLTSSPEDILMVTKDVIKEFADDGVKYLELRSTPRRE
NATGMTKKTYVESILEGIKQSKQENLDIDVRYLIAVDRRGGPLVAKETVK
LAEEFFLSTEGTVLGLDLSGDPTVGQAKDFLEPLLEAKKAGLKLALHLSE
IPNQKKETQILLDLLPDRIGHGTFLNSGEGGSLDLVDFVRQHRIPLELCL
TSNVKSQTVPSYDQHHFGFWYSIAHPSVICTDDKGVFATHLSQEYQLAAE
TFNLTQSQVWDLSYESINYIFASDSTRSELRKKWNHLKPRVLHI
Ligand information
Ligand IDEIF
InChIInChI=1S/C11H15FN5O7P/c1-11(12)6(18)4(2-23-25(20,21)22)24-9(11)17-3-14-5-7(17)15-10(13)16-8(5)19/h3-4,6,9,18H,2H2,1H3,(H2,20,21,22)(H3,13,15,16,19)/t4-,6-,9-,11-/m1/s1
InChIKeyBOEZKCHYGLAVGV-GITKWUPZSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[C]1(F)[CH](O)[CH](CO[P](O)(O)=O)O[CH]1n2cnc3C(=O)NC(=Nc23)N
CACTVS 3.385C[C@@]1(F)[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1n2cnc3C(=O)NC(=Nc23)N
OpenEye OEToolkits 2.0.7C[C@]1([C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)O)O)F
OpenEye OEToolkits 2.0.7CC1(C(C(OC1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)O)O)F
FormulaC11 H15 F N5 O7 P
Name[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain8qch Chain E Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8qch The activation chain of the broad-spectrum antiviral bemnifosbuvir at atomic resolution
Resolution2.442 Å
Binding residue
(original residue number in PDB)
H26 L27 N28 F67 F70 H74 S106 T107 G181 H208 E211 D294
Binding residue
(residue number reindexed from 1)
H15 L16 N17 F56 F59 H63 S95 T96 G170 H197 E200 D283
Annotation score1
Gene Ontology
Molecular Function
GO:0004000 adenosine deaminase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0062154 N6-methyl-AMP deaminase activity
Biological Process
GO:0006154 adenosine catabolic process
GO:0009117 nucleotide metabolic process
GO:0046103 inosine biosynthetic process
Cellular Component
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8qch, PDBe:8qch, PDBj:8qch
PDBsum8qch
PubMed39190717
UniProtQ6DHV7|ADAL_HUMAN Adenosine deaminase-like protein (Gene Name=ADAL)

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