Structure of PDB 8d8l Chain E Binding Site BS01 |
|
>8d8l Chain a (length=1506)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
uaagaauaugauguugguucagauuaagcgcuaaauaaggacaugacaca ugcgaaucauacguuuauuauugagauaauaaauaugugguguaaacgug aguaauuuuauuaggaauuaaugaacuauagaauaagcuaaauacuuaau auuauauaaaaauaauuuauauaauaaaaaggauauauauauauauauuu aucuauagucaagccaauaaugguuuagguaguagguuuauuaagaguua aaccuagccaacgauccauaaucgauaaugaaaguuagaacgaucacguu gacucugaaauauagucaauaucuauaagauacagcagugaggaauauug gacaaugaucgaaagauugauccaguuacuuauuaggaugauauauauau auauauaaauugauuaaaaauaaaauccauaaauaauuaaaauaaugaua uuaauuaccauauauuuauauggauauauauauauuuuaauaguccugac uaauauuugugccagcagucgcgguaacacaaagagggcgagcguuaauc auaaugguuuaaaggauccguagaaugaauuauauauaauuuagaguuaa uaaaauauaauuaaagaauuauaauaguaaagaugaaauaauaauaauaa uuauaagacuaauauaugugaaaauauuaauuaaauauuaacugacauug agggauuaaaacuagaguagcgaaacggauucgauacccguguaguucua guaguaaacuaugaauacaauuauuuauaauauauauauaaauaauaaau gaaaaugaaaguauuccaccugaagaguacguuagcaauaaugaaacuca aaacaauagacgguuacagacuuaagcaguggagcauguuauuuaauucg auaauccacgacuaaccuuaccauauuuugaauauuauaauaauuauaau uauuauauuacaggcguuacauuguugucuuuaguucgugcugcaaaguu uuagauuaaguucauaaacgaacaaaacuccauauauauaauuuuaauua uauauaauuuuauauuauuuauuaauauaaagaaaggaauuaagacaaau cauaaugauccuuauaauauggguaauagacgugcuauaauaaaaugaua auaaaauuauauaaaauauauuuaauuauauuuaauuaauaauauaaaac auuuuaauuuuuaauauauuuuuuuauuauaauaugaauuauaaucugaa auucgauuauaugaaaaaagaauugcuaguaauacguaaauuaguauguu acggugaauauucuaacuguuucgcacuaaucacucaucacgcguugaaa cauauuauuaucuuauuauuuauauaauauuuuuuaauaaauauuauuaa uuuauauuuauuuauaucagaaauaauaugaauuaaugcgaaguugaaau acaguuaccguaggggaaccugcggugggcuuauaaauaucuuaaauauu cuuaca |
...<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<......<<<. <<<..<<<..<<<<<<<<<<<<..>>>>>>>>>>..>>>>>.....<<<. .......<<<<<.<<.........<<<<<<<<.<<<<.......>>>>.. .<<<<<<<<<.....>>>>>>>>>......<<<<<<<<<..>>>>>>>>> .>>>>>>>>....>>>>>>><<<....<<<..<<<<<<<<........>> >>>>>>>>>......>>>..<<<<.<<<<....>>>>...>>>>.>>><< <<<<.........>>>>>><<<<.....>>>>..>>>>>>.........< <<...<<<<<....>>>>.>>>>...>.>>>>>>.<<<<..<<<<<<... .>>>>>>..<<......>>.....>>>>..<<<<<<<<............ ..>>>>><<<<<<<..>>>>>>>.<<<<..>>>>.>>>....<<<<<((( .....<<<<.....<<.)))>>.......>>>>.>>>>>..>>>>>>>>> .....<<<((.....<<<<...<.<<.<<<<<<..>>>>>>...<<<<<< <<.....<<<<<<<<<..<<<<<<<....<...........>.......> >>>>>>..>>.......<<....>>.>>>>>>>..>>>>>>>>...>>>. ..>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>> >>..........<<<<<<.<<<<<<<<<<<<..>>.>>>>>>>>>>..<< ..))>>....>>>>>>.>>>.<<.......<<<<....>>>>.....>>. .)))).]<<.<<...<<<<......<<<<<..<<<<<<<<<<........ ....................<<<<<<<.....<<.<<<<<<<<<<..>>> >>>>>>>.>>.<<<.<<..<<<<<<<<<<<<..<<<<<<<<<....>>>. ...<<......>>....>>>>>>.....<<<.<<<<<<<<........>> >>>>>>..<<<<<<<<<.....>>>>>>>>>....>>>...>>>>>>>.. ..>>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<... .....<<<..<<..<<<<<<......>>>>>>..>>....>>>......> >>>>>......<<<<<.<....>.>>>>>.....<....<<<<<<<.... ....>>>>>>>....>.....>>>>>.....<<.<<<<<.........>> >>>>>...........>>>>..>>..>>....<.<<<.<.<<<<<<<<.. <<<<<<<<<.<<<...<<<..<<<.<<<<<...<<<<<<<...>>>>>>> ...>>>>>>>>..>>>..>>>>>>>>>>>>..>>>>>>>>..>.>>.>.> .....<<<<<<<<<....>>>>>>>>>....................... ...... |
|
Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
PDB | 8d8l Principles of mitoribosomal small subunit assembly in eukaryotes. |
Resolution | 2.6 Å |
Binding residue (original residue number in PDB) | R47 R50 N51 Q132 K152 V154 S155 N156 Q157 T158 G159 K162 K185 R187 E188 K196 W199 R203 R223 Y224 H225 K228 H230 R232 R241 V242 N243 H244 G260 K261 V262 Y263 K264 S265 R266 N267 M269 N270 K273 |
Binding residue (residue number reindexed from 1) | R34 R37 N38 Q113 K133 V135 S136 N137 Q138 T139 G140 K143 K166 R168 E169 K177 W180 R184 R204 Y205 H206 K209 H211 R213 R222 V223 N224 H225 G241 K242 V243 Y244 K245 S246 R247 N248 M250 N251 K254 |
|
|
Enzyme Commision number |
? |
|
|
|