Structure of PDB 7zmb Chain E Binding Site BS01
Receptor Information
>7zmb Chain E (length=337) Species:
759272
(Thermochaetoides thermophila DSM 1495) [
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ISDIHITRTGKPLIRIQGGRSSLGEHTATVFGATGQLGRYIVNRLARQGC
TVIVPYREEMAKRHLKVSGDLGRVIFMEFDLRNTQSIEESVRHSDVVYNL
IGRDYPTKNFSLADVHIEGTERIVEAVAKYDVDRFIQVSTYNANPDSTCE
FFRTKGIAEKVARHVFPETTIVRPAPMFGFEDRLLLKLASVTNLFTSNHM
REKFWPVHVNEVGEALERMLYDDSTAGQTFELYGPRQYSMAQIAELVDRE
IYKKRRHINLPKPILQPLAELINRVLWWDTGLSRDQVEREFHDQVIDPTA
KTFKDLGMEPTDISKWTYHYLLPYRPSTYYDLPPSTE
Ligand information
Ligand ID
NDP
InChI
InChI=1S/C21H30N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1,3-4,7-8,10-11,13-16,20-21,29-31H,2,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
ACFIXJIJDZMPPO-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
CACTVS 3.341
NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
Formula
C21 H30 N7 O17 P3
Name
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
ChEMBL
CHEMBL407009
DrugBank
DB02338
ZINC
ZINC000008215411
PDB chain
7zmb Chain E Residue 402 [
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Receptor-Ligand Complex Structure
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PDB
7zmb
Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum.
Resolution
2.75 Å
Binding residue
(original residue number in PDB)
G57 T59 G60 Q61 L62 R82 L106 L125 I126 G127 R128 F135 V140 V163 T165 K180 M202 R208
Binding residue
(residue number reindexed from 1)
G32 T34 G35 Q36 L37 R57 L81 L100 I101 G102 R103 F110 V115 V138 T140 K155 M177 R183
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:7zmb
,
PDBe:7zmb
,
PDBj:7zmb
PDBsum
7zmb
PubMed
36427319
UniProt
G0SB35
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