Structure of PDB 7wgs Chain E Binding Site BS01

Receptor Information
>7wgs Chain E (length=181) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IPTVIAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIY
LYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGK
RFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQS
IEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP
Ligand information
Ligand ID9A2
InChIInChI=1S/C28H35F3N4O3/c1-4-18(2)25-26(37)34(19(3)21-12-7-10-20-9-5-6-11-22(20)21)17-23-33(16-13-24(36)35(23)25)27(38)32-15-8-14-28(29,30)31/h5-7,9-12,18-19,23,25H,4,8,13-17H2,1-3H3,(H,32,38)/t18-,19+,23-,25+/m1/s1
InChIKeyBAZGDIOJCKGDHH-UXELZNRMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCC(C)C1C(=O)N(CC2N1C(=O)CCN2C(=O)NCCCC(F)(F)F)C(C)c3cccc4c3cccc4
OpenEye OEToolkits 2.0.7CC[C@@H](C)[C@H]1C(=O)N(C[C@H]2N1C(=O)CCN2C(=O)NCCCC(F)(F)F)[C@@H](C)c3cccc4c3cccc4
CACTVS 3.385CC[CH](C)[CH]1N2[CH](CN([CH](C)c3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCCCC(F)(F)F
CACTVS 3.385CC[C@@H](C)[C@@H]1N2[C@H](CN([C@@H](C)c3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCCCC(F)(F)F
FormulaC28 H35 F3 N4 O3
Name(6S,9aS)-6-[(2R)-butan-2-yl]-8-[(1S)-1-naphthalen-1-ylethyl]-4,7-bis(oxidanylidene)-N-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain7wgs Chain E Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7wgs Anti-infective therapy using species-specific activators of Staphylococcus aureus ClpP.
Resolution2.11 Å
Binding residue
(original residue number in PDB)
L24 D27 I29 Y61 Y63 Q89 T90 I91
Binding residue
(residue number reindexed from 1)
L13 D16 I18 Y50 Y52 Q78 T79 I80
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.21.92: endopeptidase Clp.
Gene Ontology
Molecular Function
GO:0004176 ATP-dependent peptidase activity
GO:0004252 serine-type endopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0051117 ATPase binding
Biological Process
GO:0006508 proteolysis
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins
Cellular Component
GO:0005737 cytoplasm
GO:0009368 endopeptidase Clp complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7wgs, PDBe:7wgs, PDBj:7wgs
PDBsum7wgs
PubMed36376309
UniProtQ2G036|CLPP_STAA8 ATP-dependent Clp protease proteolytic subunit (Gene Name=clpP)

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