Structure of PDB 7qsw Chain E Binding Site BS01

Receptor Information
>7qsw Chain E (length=466) Species: 32630 (synthetic construct) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AYEAGVKEYRQTYYDPDYTPKDTDILAAFRITPQPGVPPEEAAAAVAAES
STGTWTTVWSDLLTDLDRYKARCYRIEPVPGNDNQYIAYIAYPLDLFEEG
SIVNLMSSIVGNVFGFKAVRALRLEDMRIPVAYLKTFQGPPHGIQVERDR
LNKYGRPLLGCTIKPKLGLSAKNYGRVVYECLRGGLDFTKDDENINSQPF
MRWRDRFLFVMEAVHKAEAETGERKGHYLNVTAPTMEEMYKRAEFAKELG
SRIIMVDFLTAGFTAFTSLSKWCRENGMLLHLHRAMHAVIDRQPNHGIHF
RVLAKWLRMVGGDHIHTGTVVGKLEGDRASTLGFVDLLRENYIPADPSRG
IYFDQDWASMPGVFPVASGGIHVWHMPELVTIFGDDAVLQFGGGTLGHPW
GNAAGATANRVALEAVVQARNEGRDILAEGREILKEAARWSPELRAAMET
WKDIKFEFETVDTLDV
Ligand information
Ligand IDCAP
InChIInChI=1S/C6H14O13P2/c7-3(1-18-20(12,13)14)4(8)6(11,5(9)10)2-19-21(15,16)17/h3-4,7-8,11H,1-2H2,(H,9,10)(H2,12,13,14)(H2,15,16,17)/t3-,4-,6-/m1/s1
InChIKeyITHCSGCUQDMYAI-ZMIZWQJLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C(C(C(COP(=O)(O)O)(C(=O)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[CH](CO[P](O)(O)=O)[CH](O)[C](O)(CO[P](O)(O)=O)C(O)=O
ACDLabs 10.04O=P(O)(O)OCC(O)C(O)C(O)(C(=O)O)COP(=O)(O)O
OpenEye OEToolkits 1.5.0C([C@H]([C@H]([C@](COP(=O)(O)O)(C(=O)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@](O)(CO[P](O)(O)=O)C(O)=O
FormulaC6 H14 O13 P2
Name2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain7qsw Chain E Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7qsw Evolution of increased complexity and specificity at the dawn of form I Rubiscos.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		T171 K173 K199 D201 E202 H292 R293 H325 K332 S377 G378 G401 G402
Binding residue
(residue number reindexed from 1)		T162 K164 K190 D192 E193 H283 R284 H316 K323 S368 G369 G392 G393
Annotation score2
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 29 06:32:56 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7qsw', asym_id = 'E', bs = 'BS01', title = 'Evolution of increased complexity and specificity at the dawn of form I Rubiscos.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7qsw', asym_id='E', bs='BS01', title='Evolution of increased complexity and specificity at the dawn of form I Rubiscos.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0000287,0015977,0016984', uniprot = '', pdbid = '7qsw', asym_id = 'E'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0015977,0016984', uniprot='', pdbid='7qsw', asym_id='E')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>