Structure of PDB 7pir Chain E Binding Site BS01

Receptor Information
>7pir Chain E (length=167) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIK
KQLSAHYYRWKFSGDNQSTKDFKRTANINKQVLRELIINLEREYGYLASI
NPKKQQLALQKRAKYDEIIARENNPENPDVPVTSGLASTQPRLSRTEKAQ
KPKEELWDVVQKMGNFD
Ligand information
>7pir Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>..<<<.<<<<<...<<<<<<........
........<<..<<.<<<<<<....>>>>>>.>>>>.......<<.....
...<.<.<<<..<<........<<.<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<.............>.>>>....<<<<<<...
.>>>>>>.>>.......>>>>>.>.>.<<.....<<<..<<<<<<<<...
....>>>>>>>>>>>.......>>..<<<<<<<<....>>>...>>>>>.
>>.<<<<<............>>>>>.<<<<....>>>>............
......<<<....<<<<....>>>>..>>>...>.>>>>>...<<<<...
....<<<.....>>>......>>>>...<..<.<<........<<<<<<<
..........>>>>>>>.........>>>....>.....<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>.....
......<<<(......<<<<...<<<.<<<<<<..<<<<<.<<<<.....
<<<<<<<.....>>>>>>>..>>>>.>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<<<<<..<<........>>.....>>>>>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>....<<<<<<<.......<<<<.........>>>>....>>>>>>>.
.........<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
.)>>.....>>>>>>.>>>.<<<.......<<<....>>>.....>>>..
..))).]<<.<<.<<<<<<<.....<<<....<<<<<<<<<<......<<
........>>..........<<<<<<.........<<<<<....<<<.<<
....>>.>>>.>>>>>....<<<.<<<..<<<<<<.......<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.
........>>>>>>>.....<<<<<....>>>>>........>>>>....
.....>>...>>>>>>>>>>....>>>>>>...>>.>>>>>>>>.....<
<<<<<......<<<..<<..<<<<....>>>>..>>....>>>.....>>
>>>>......<....<<<<<<<........>>>>>>>....>.......>
>>.....<<<<<<<..........>>>>>>>...........>>>>>>>>
>..>>....<..<<.<.<<<<.<....<<<<<<..<<<<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>...>.>>>..>>>>>>....>.>>>>
..>.>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7pir Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution12.1 Å
Binding residue
(original residue number in PDB)		Y3 Y47 D65 N66 T69 K70 K73 R74 N77 I87 E93 Y94 G95 Y96 L97 S99 K103 Q106 L109 Q110 K114 N123 E126 N127 P128 D129 V130 P131 V132 S134 G135 L136 A137 S138 T139 Q140 P141
Binding residue
(residue number reindexed from 1)		Y3 Y47 D65 N66 T69 K70 K73 R74 N77 I87 E93 Y94 G95 Y96 L97 S99 K103 Q106 L109 Q110 K114 N123 E126 N127 P128 D129 V130 P131 V132 S134 G135 L136 A137 S138 T139 Q140 P141
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pir, PDBe:7pir, PDBj:7pir
PDBsum7pir
PubMed36171285
UniProtP75543|RS6_MYCPN Small ribosomal subunit protein bS6 (Gene Name=rpsF)

[Back to BioLiP]