Structure of PDB 7lcg Chain E Binding Site BS01

Receptor Information
>7lcg Chain E (length=496) Species: 64286 (Usutu virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FNCLGMSNRDFLEGATWVDVVLEGDSCITIMAKDKPTIDIKMMETEATNL
AEVRSYCYLATVSDVSTVSNCPTTGEAHNPKRAEDTYVCKSGVTDRGWGN
GCGLFGKGSIDTCANFTCSLKAVGRMIQPENVKYEVGIFIHGSTSSDTHG
NYSSQLGASQAGRFTITPNSPAITVKMGDYGEISVECEPRNGLNTEAYYI
MSVGTKHFLVHREWFNDLALPWTSPASSNWRNREILLEFEEPHATKQSVV
ALGSQEGALHQALAGAVPVSFSSSVKLTSGHLKCRVKMEKLTLKGTTYGM
CTEKFSFAKNPADTGHSTVVLELQYTGSDGPCKIPISIVASLSDLTPIGR
MVTANPYVASSEANAKVLVEMEPPFGDSYIVVGRGDKQINHHWHKAGSSI
GKAFITTIKGAQRLAALGDPAWDFGSVGGIFNSVGKAVHQVFGGAFRTLF
GGMSWITQGLMGALLLWMGVNARDRSIALVMLATGGVLLFLATSVH
Ligand information
Ligand ID0SM
InChIInChI=1S/C27H57N2O6P/c1-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-27(31)28-26(25(2)30)24-35-36(32,33)34-23-22-29(3,4)5/h25-26,30H,6-24H2,1-5H3,(H-,28,31,32,33)/p+1/t25-,26-/m0/s1
InChIKeyHJYAGZCWSLDECN-UIOOFZCWSA-O
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCCCCCCCCCCCCCC(=O)N[CH](CO[P](O)(=O)OCC[N+](C)(C)C)[CH](C)O
CACTVS 3.385CCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[P](O)(=O)OCC[N+](C)(C)C)[C@H](C)O
OpenEye OEToolkits 1.9.2CCCCCCCCCCCCCCCCCC(=O)NC(COP(=O)(O)OCC[N+](C)(C)C)C(C)O
ACDLabs 12.01O=P(OCC(NC(=O)CCCCCCCCCCCCCCCCC)C(O)C)(OCC[N+](C)(C)C)O
OpenEye OEToolkits 1.9.2CCCCCCCCCCCCCCCCCC(=O)N[C@@H](COP(=O)(O)OCC[N+](C)(C)C)[C@H](C)O
FormulaC27 H58 N2 O6 P
NameTRIMETHYL-[2-[[(2S,3S)-2-(OCTADECANOYLAMINO)-3-OXIDANYL-BUTOXY]-OXIDANYL-PHOSPHORYL]OXYETHYL]AZANIUM;
N-OCTADECANOYL-D-ERYTHRO-SPHINGOSYLPHOSPHORYLCHOLINE
ChEMBL
DrugBank
ZINCZINC000098207863
PDB chain7lcg Chain E Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7lcg Structure of Usutu virus SAAR-1776 displays fusion loop asymmetry.
Resolution2.42 Å
Binding residue
(original residue number in PDB)
G413 R416 A424 W425
Binding residue
(residue number reindexed from 1)
G410 R413 A421 W422
Annotation score1
Enzymatic activity
Enzyme Commision number 2.1.1.56: mRNA (guanine-N(7))-methyltransferase.
2.1.1.57: methyltransferase cap1.
2.7.7.48: RNA-directed RNA polymerase.
3.4.21.91: flavivirin.
3.6.1.15: nucleoside-triphosphate phosphatase.
3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0046983 protein dimerization activity

View graph for
Molecular Function
External links
PDB RCSB:7lcg, PDBe:7lcg, PDBj:7lcg
PDBsum7lcg
PubMed34417300
UniProtQ5WPU5|POLG_USUV Genome polyprotein

[Back to BioLiP]