Structure of PDB 7eby Chain E Binding Site BS01

Receptor Information
>7eby Chain E (length=762) Species: 1744839 (Cupriavidus sp. P4-10-C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTDRYAAPGLEKPASILIDRWGVPHIYAGTLYDAFYAQGFIAARDRLWQI
DLWRKRGLGEMARDFGPAYVDGDRMARAVLYRGDMYREWLAYGSDAKRVA
EAFVAGVNAYVALTEAQPELLPREFKQLGYKPSRWRAEDIVRIRHHGLTL
NFTGEVDRATLYCQAKEQAARADWLRRELDPPITPTLPEGLDPCAVPAAA
LKKAYTLATAAANFPKEAWSNNWVIAGSRTSTGRPILANDPHRAHGAPSL
RYVSHLNAPGLSVIGAGEPFLPGISIGHNGTIAFGLTRFYMDQEDLYVYE
TDPAQPKSYRYRGRWEPMETITEKITVRGEAEPRTVTIDFTRHGPVLHAD
DASHRAWALRAAWLDTGMAPYFGSMDYMRATNWDQFRAAMNRWGAPGENQ
VYADRNGNIGWIPGGLTVIRPNWDGLFPVPGDGRYEWAGYRNMDELPWAY
NPSTGHIVTANENNIPPDHPAAKLGVGYEWSDSSRARRLKSLVAAAPVSS
LRDSIAWQNDTVSLPAQRTLAVMRTVGNAGAAASLLQDPQVQRAVALLRG
WDGNVRADSVPAALFEIWFSNHLRQAVVRAALPEDAAKLVGAGDAARVLA
VLEQPDTWMPTARRDEVMLTSLKAAMAELERRSPSPEKLATWGTLHRAIF
RHPLANIVDDATRAQYNVDAGGIGGSAFTPMNTSYRNSDYHLTAGASFRM
VLDVGNWDQGRVVNTPGQSGDPGNSHYRDLAPIWAKGQTFPLVYSRKAVE
RAAEKRIELTPR
Ligand information
Ligand IDCO3
InChIInChI=1S/CH2O3/c2-1(3)4/h(H2,2,3,4)/p-2
InChIKeyBVKZGUZCCUSVTD-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(=O)([O-])[O-]
ACDLabs 10.04
CACTVS 3.341		[O-]C([O-])=O
FormulaC O3
NameCARBONATE ION
ChEMBL
DrugBankDB14531
ZINC
PDB chain7eby Chain E Residue 904 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7eby Protein Engineering of d-Succinylase from Cupriavidus sp. for d-Amino Acid Synthesis and the Structural Implications.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		S282 H304 R350
Binding residue
(residue number reindexed from 1)		S220 H242 R288
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
Biological Process
GO:0017000 antibiotic biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7eby, PDBe:7eby, PDBj:7eby
PDBsum7eby
PubMed
UniProtA0A0N7KZ58

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