Structure of PDB 6zga Chain E Binding Site BS01

Receptor Information
>6zga Chain E (length=750) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPY
NPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENM
PLELQSTTIEYITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLL
PPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQK
PTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWS
VPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVN
SELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYD
QIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFN
GNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLS
PYHSYAIFFEIANTHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPA
IAASFDQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNK
DDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDT
TNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGE
QIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRFPLPRFIDTEAGG
SQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAVSGQA
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6zga Chain E Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zga Structure of the complete, membrane-assembled COPII coat reveals a complex interaction network.
Resolution4.6 Å
Binding residue
(original residue number in PDB)		C56 C61 C80
Binding residue
(residue number reindexed from 1)		C55 C60 C79
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005096 GTPase activator activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0003400 regulation of COPII vesicle coating
GO:0006886 intracellular protein transport
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
GO:0016236 macroautophagy
GO:0061709 reticulophagy
GO:0070863 positive regulation of protein exit from endoplasmic reticulum
GO:0090110 COPII-coated vesicle cargo loading
GO:0090114 COPII-coated vesicle budding
GO:1902953 positive regulation of ER to Golgi vesicle-mediated transport
Cellular Component
GO:0000139 Golgi membrane
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0012507 ER to Golgi transport vesicle membrane
GO:0016020 membrane
GO:0030127 COPII vesicle coat
GO:0031410 cytoplasmic vesicle
GO:0070971 endoplasmic reticulum exit site

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6zga, PDBe:6zga, PDBj:6zga
PDBsum6zga
PubMed33795673
UniProtP15303|SEC23_YEAST Protein transport protein SEC23 (Gene Name=SEC23)

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