Structure of PDB 6y64 Chain E Binding Site BS01

Receptor Information
>6y64 Chain E (length=258) Species: 1634381 (Sheep polyomavirus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ITEIEAYLNPRMGQPQNEDFYGFSDNVTVSDDFGSDAPPWKQFPCYSTAR
ISLPMLNQDMTSDTILMWEAISCRTEVMGVNMLTNVHSAQKRVYENDREG
TGIGVEGMGYHMFAIGGEPLELQFMVFNHRATYPAEATVIKNPGASSQVF
DPNLKGTLTADGVFPVEAWGPDPFKNENTRYFGQYTGGTQTPPVLTFTNT
QTTILLDENGVGPLCKGDGLFLSCADIVGFFTQHNKKMSFRGLPRYFRVT
LRKRVVKN
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6y64 Chain D Residue 406 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6y64 Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family.
Resolution1.6 Å
Binding residue
(original residue number in PDB)
F207 E210
Binding residue
(residue number reindexed from 1)
F174 E177
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:6y64, PDBe:6y64, PDBj:6y64
PDBsum6y64
PubMed32723915
UniProtA0A0E3ZCF3

[Back to BioLiP]